Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30010
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 248 8e-67
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 62 6e-11
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.91
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.1
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 2.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 3.7
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.8
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 6.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.5
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 8.5
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 25 8.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 248 bits (606), Expect = 8e-67
Identities = 116/217 (53%), Positives = 157/217 (72%)
Frame = +3
Query: 84 KSNYFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTMMRKAIKDHL 263
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 264 DNNPALEKLLPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 443
++ P LE+LLP ++GNVG VFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 444 LGP*KTYFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVG 623
+ P KT FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187
Query: 624 KQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALS 734
+YD G +F+PEILD+ EDL + + + A+S
Sbjct: 188 LTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAIS 224
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 62.5 bits (145), Expect = 6e-11
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 21/222 (9%)
Frame = +3
Query: 21 KFHRSPYATLSRMGREDKATWKSNYFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLR 200
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 201 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGLVFTRGDLVEVRDKLL 365
GS I MGK +M KA+ ++H +N L KLL G VGL+FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 366 ENKVQAP-ARPGAIAPLSVVIPA----HNTGLGP*K-----TYFFQ----ALSIPTKISK 503
E+ VQ AR GA+AP + VIPA G P + T+ + L +PT +
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKN 176
Query: 504 GTIEIINDVHILKPGDKVGASEATLLNMLNI--SPFSYGLVG 623
G + ++ D + G ++ + + LL + I + F GL+G
Sbjct: 177 GVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLG 218
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 214 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATL 315
CS EKT C++ K+ T+ +PS CC ++T+
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTV 295
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 280 RAGLLSRWSLMALRIIVFFPMSTILEPR 197
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 358 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 233
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 433 TTPASVHRKPISSK-LFPSLPKFQRVLLKSSTMYTS 537
TT V+RKP+SS+ F +LP + LL ++ TS
Sbjct: 562 TTNEKVYRKPLSSQNTFDTLPTISQGLLAATQPVTS 597
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 427 PPTTPASVHRKPISSKLFPSLPKFQRVLLKSST 525
PPTT ++ + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 373 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 212
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 6.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 451 GPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSFS 281
G PV + + G++ P AGAW L N L T + +NT P PL G FS
Sbjct: 139 GGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIFS 195
Query: 280 RAGL 269
L
Sbjct: 196 EEEL 199
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 210 IVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGLVFTRGDLVE 347
I L+G N ++ DH+ +P ++ P+I LV ++GDLV+
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLVK 444
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 358 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVHRKPISSKLFPSLPKFQRVLLKS 519
+ +R++ R L+ P +S PP TPA+ + ++P+ R++L++
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 669 PEFQVQK*FQNHIPAYQQDHMRMERCSTC*EGWLQKLQPCH 547
PEF K ++H+ ++ D + E +T EGW K P H
Sbjct: 160 PEF---KEIRSHLAEFRDDEL--EHLNTAVEGWNAKEAPAH 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,927
Number of Sequences: 5004
Number of extensions: 73995
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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