Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30009X
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.4  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
           +KKE   E++DK+K      G+  D+  K+E+
Sbjct: 231 EKKEEEGEDKDKDKPKIEDVGEDEDEDTKKED 262



 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 378 RNQLKVVKKKEFTLEEEDKEKKPGWSK 298
           + + K +K+K +T +EE  + KP W++
Sbjct: 263 KKKKKTIKEK-YTEDEELNKTKPIWTR 288


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 204 NYVMCPIVCLSAKRLKFYLSGC 139
           N   C   C SAKR KF  S C
Sbjct: 188 NKCCCLRTCSSAKRPKFENSSC 209


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 356  KRRNSPWKRKTKRKSLAG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 360  VKKKEFTLEEEDKEKKPGWSKGK 292
            VKK +  LEEE K+ +    K K
Sbjct: 1066 VKKTKKELEEEKKQAEEAKRKAK 1088


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 356  KRRNSPWKRKTKRKSLAG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 360  VKKKEFTLEEEDKEKKPGWSKGK 292
            VKK +  LEEE K+ +    K K
Sbjct: 1066 VKKTKKELEEEKKQAEEAKRKAK 1088


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 356  KRRNSPWKRKTKRKSLAG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 360  VKKKEFTLEEEDKEKKPGWSKGK 292
            VKK +  LEEE K+ +    K K
Sbjct: 1066 VKKTKKELEEEKKQAEEAKRKAK 1088


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 356  KRRNSPWKRKTKRKSLAG 303
            K++    KRK K+KSL G
Sbjct: 1077 KKQAEEAKRKAKQKSLLG 1094



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 360  VKKKEFTLEEEDKEKKPGWSKGK 292
            VKK +  LEEE K+ +    K K
Sbjct: 1066 VKKTKKELEEEKKQAEEAKRKAK 1088


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,124
Number of Sequences: 336
Number of extensions: 1769
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)