Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30009X
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    29   0.39 
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    27   1.6  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    26   2.1  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 381  FRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQ 280
            FRNQ+K   ++   L E+ KE    W +G   DQ
Sbjct: 1071 FRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 360 VKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
           ++  E+ L++E+KE+K    K +   +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 354 KKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
           KK+    ++D+  K    K K G  K KEE +E
Sbjct: 83  KKDKPSADKDRISKKDKKKSKKGKSKTKEESIE 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,180
Number of Sequences: 5004
Number of extensions: 28653
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)