Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30009X
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 34 0.053
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 29 2.0
01_07_0033 - 40619145-40619658,40619761-40620002,40620178-406205... 28 2.7
01_07_0034 - 40625755-40626268,40626358-40626599,40627034-406274... 28 3.5
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870... 27 4.6
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 27 4.6
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 27 6.1
04_03_0793 + 19699355-19699472,19700245-19700633,19700824-197010... 27 6.1
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803... 27 6.1
03_05_0519 - 25131614-25134778 27 6.1
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 27 6.1
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604... 27 8.1
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 27 8.1
04_04_1178 + 31508349-31508461,31510074-31510932 27 8.1
02_04_0073 - 19471254-19472681 27 8.1
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 33.9 bits (74), Expect = 0.053
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 336 EEEDKEKKPGWSKGKPGDQKVKEEE 262
EEE++E++PGW G GD + EEE
Sbjct: 14 EEEEEEEEPGWDDGGGGDTMLVEEE 38
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 15 GRHMIYVK*CPLEDTKRLVT*DRICLNFTYISGSLTHRHSASSQINKI 158
GR ++V P + KR+V D CLN + + HR SS + +
Sbjct: 65 GRLKVFVYDLPSKYNKRIVAKDPRCLNHMFAAEIFMHRFLLSSAVRTL 112
>01_07_0033 -
40619145-40619658,40619761-40620002,40620178-40620566,
40621586-40621688
Length = 415
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 15 GRHMIYVK*CPLEDTKRLVT*DRICLNFTYISGSLTHRHSASSQINKI 158
GR +YV P + K++V D CL+ + + HR SS I +
Sbjct: 47 GRLKVYVYELPTKYNKKMVAKDSRCLSHMFAAEIFMHRFLLSSAIRTL 94
>01_07_0034 -
40625755-40626268,40626358-40626599,40627034-40627422,
40628119-40628227
Length = 417
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 15 GRHMIYVK*CPLEDTKRLVT*DRICLNFTYISGSLTHRHSASSQI 149
GR +YV P + K+L+ D CLN + + HR SS +
Sbjct: 49 GRLKVYVYDLPSKYNKKLLKKDPRCLNHMFAAEIFMHRFLLSSAV 93
>04_04_0995 +
29985473-29985625,29986372-29986446,29986537-29987044,
29987349-29987734,29988418-29988641,29988728-29988893,
29989095-29989226
Length = 547
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 227 KTFHQLSIIMLCAL*CV--CLQRDLNFIYLAACAVSMCERARYISKV 93
KT +S + C CV CL+ + N + C S C R RY+ +
Sbjct: 314 KTLDSMSDVAYCPR-CVTACLEDEENNAQCSKCFFSFCTRCRYLRHI 359
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 405 QNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVEA 253
+ K E R + K K+KE +E DKEK+ KGK +K E +++A
Sbjct: 750 KEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRK-DEMDIDA 799
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 336 EEEDKEKKPGWSKGKPGDQKVKEEEVEA*TS 244
EEE++E + G+ +++V EEE+EA T+
Sbjct: 91 EEEEEEVEEEQGAGEEEEEEVDEEEIEAVTT 121
>04_03_0793 +
19699355-19699472,19700245-19700633,19700824-19701065,
19701150-19701663
Length = 420
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 15 GRHMIYVK*CPLEDTKRLVT*DRICLNFTYISGSLTHRHSASSQINKI 158
GR +++ P + K++V D CLN + + HR SS + +
Sbjct: 52 GRLKVFIYDLPRKYNKKMVNKDPRCLNHMFAAEIFMHRFLLSSAVRTL 99
>04_01_0611 -
8029101-8029205,8029985-8030107,8030191-8030556,
8030639-8031124
Length = 359
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -3
Query: 405 QNKAAEFSFRNQLKVV-KKKEFTLEEEDKEKK 313
+++ E +N++ V +KK+FT+ +ED+EKK
Sbjct: 168 EDQEEEEDVKNEVAVPSRKKDFTMVKEDQEKK 199
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 27.1 bits (57), Expect = 6.1
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 414 AQLQNKAAEFSFRNQLKVVK--KKEFTLEEEDKEKKPGWSKGKPGDQKVKEE 265
A + K AE + + + K + KKE E++DK+K P KGK +K KEE
Sbjct: 195 APAEEKKAEEAKKEEKKSAEADKKE---EKDDKKKSP--EKGKKDGEKPKEE 241
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 342 TLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
T + +DK+K G KGK +++ KE+++E
Sbjct: 900 TDKSKDKDKDKGKGKGKVKEKEKKEKDIE 928
>11_06_0141 +
20559828-20559986,20560074-20560281,20560375-20560433,
20560532-20560590,20560809-20560886,20560974-20561073,
20561174-20561245,20561327-20561434,20561677-20561730,
20562847-20563296
Length = 448
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -3
Query: 414 AQLQNKAAE--FSFRNQLKVVKKKEFTLEEEDK 322
AQ +N AA FSFR Q + K+KEF + E+K
Sbjct: 197 AQRKNAAAAAGFSFRLQERAEKRKEFYQKLEEK 229
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 366 KVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
KV KK+ EE+K + + K G++K +EEE
Sbjct: 86 KVEAKKKAAAAEEEKAVEEAAGEKKDGEEKKEEEE 120
>04_04_1178 + 31508349-31508461,31510074-31510932
Length = 323
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
+K++ L++++ K +KG +QK K+++VE
Sbjct: 38 RKEKSKLQDKETSLKKAAAKGSKAEQKAKKKQVE 71
>02_04_0073 - 19471254-19472681
Length = 475
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 254 HEHHNTRIIKTFHQLSIIMLCAL*CVCLQR 165
H H + +I +TF+ + I +LC L + + R
Sbjct: 34 HHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,354,026
Number of Sequences: 37544
Number of extensions: 183541
Number of successful extensions: 479
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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