Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30009X
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22) 29 1.2
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066) 29 1.6
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 2.7
SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14) 28 2.7
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0) 28 2.7
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 27 4.8
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17) 27 6.3
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 27 8.3
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12) 27 8.3
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0) 27 8.3
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41) 27 8.3
SB_10953| Best HMM Match : HALZ (HMM E-Value=0.25) 27 8.3
SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25) 27 8.3
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 27 8.3
>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
Length = 1067
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 333 EEDKEKKPGWSKGKPGDQKVKEEE 262
EED+EK G K GD+K+KE E
Sbjct: 628 EEDEEKDEGELDNKYGDEKIKETE 651
>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
Length = 443
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 336 EEEDKEKKPGWSKGKPGDQKVKEE 265
++EDK K SKGK GD+K +E+
Sbjct: 213 KKEDKRKDSAKSKGKDGDRKKRED 236
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 233 IIKTFHQLSIIMLCAL*CVCLQRDLNFIYLAA-CAVSMCERARYI 102
I+ F LS + LCA+ L L ++YL A C ++ RY+
Sbjct: 1838 ILALFVSLSYLCLCAICIFALSVSLRYLYLCAICIFALSVSLRYL 1882
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 375 NQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEE 265
++ K KKKE EE+DK+KK K K +++ ++E
Sbjct: 1924 DEKKEKKKKEENEEEDDKKKKTKKKKKKEEEEQEEDE 1960
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 366 KVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEE 262
K KKK+ EEED +KK K K +++ +E+E
Sbjct: 1926 KKEKKKKEENEEEDDKKKKTKKKKKKEEEEQEEDE 1960
>SB_52112| Best HMM Match : PH (HMM E-Value=2.4e-14)
Length = 356
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 333 EEDKEKKPGWSKGKPGDQKVKEEE 262
EED+EK G K GD+K KE E
Sbjct: 144 EEDEEKDEGELDNKYGDEKTKETE 167
>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
Length = 584
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 357 KKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVEA 253
KKKE + EEE+K ++ SK K +K K+E+ E+
Sbjct: 492 KKKEESEEEEEKSEEEKKSKKKTKTKKGKKEKQES 526
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 333 EEDKEKKPGWSKGKPGDQKVKEEEVEA 253
+ DK+ + WSK K D K++E+ + A
Sbjct: 304 DRDKKSRRSWSKSKERDSKLREKTMVA 330
>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 378 RNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
+ + K KKKE EEE++E++ K + +++ +EEE E
Sbjct: 181 KKKKKKKKKKEEEEEEEEEEEEEKEEKEEEEEEEEEEEEEE 221
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -3
Query: 405 QNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
+ K E +++ +++K+ EEE+K++K + K D+K KEEE E
Sbjct: 1032 KTKEGEKKMKDEQDEIERKK--AEEEEKKRKEE-EESKKKDEKEKEEEDE 1078
>SB_22230| Best HMM Match : CARD (HMM E-Value=3.8e-17)
Length = 555
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 411 QLQNKAAEFSFR-NQLKVVKKKEFTLEEEDKEKKPGWSK 298
Q Q+ + SF QLK +KK+ +E+KE+K G K
Sbjct: 172 QFQSDFSTMSFEIKQLKEARKKDAKKLKEEKEQKAGLEK 210
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -3
Query: 399 KAAEFSFRNQLKVVKKKEFTL--EEEDKEKKPGWSKGKPGDQKVKEEEVEA 253
+AAE R +L+V KK+E EEE +EK+ + K +K K+E +E+
Sbjct: 1172 RAAEAE-RRRLEVQKKREEKKKREEEMREKEKEMEQNKIDQEKRKQELMES 1221
>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
Length = 652
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 399 KAAEFSFRNQLKVVKKKEFTLEEEDK 322
K+ +F F NQ +++KKK TLE E++
Sbjct: 14 KSMDF-FNNQFELIKKKVTTLERENE 38
>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
Length = 1710
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 213 TVNNYVMCPIVCLSAKRLKFYLSGCLRC 130
TV +++ P VC ++ F LSGC+ C
Sbjct: 1608 TVISFLWRPDVCAISEHKAFILSGCIFC 1635
>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
Length = 1047
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 399 KAAEFSFRNQLKVVKKKEFTLEEEDK 322
K+ +F F NQ +++KKK TLE E++
Sbjct: 14 KSMDF-FNNQFELIKKKVTTLERENE 38
>SB_10953| Best HMM Match : HALZ (HMM E-Value=0.25)
Length = 319
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 399 KAAEFSFRNQLKVVKKKEFTLEEEDK 322
K+ +F F NQ +++KKK TLE E++
Sbjct: 148 KSMDF-FNNQFELIKKKVTTLERENE 172
>SB_40295| Best HMM Match : HALZ (HMM E-Value=0.25)
Length = 477
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3
Query: 399 KAAEFSFRNQLKVVKKKEFTLEEEDK 322
K+ +F F NQ +++KKK TLE E++
Sbjct: 229 KSMDF-FNNQFELIKKKVTTLERENE 253
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = -3
Query: 411 QLQNKAAEFSFRNQLKVVKKKEFTLEEEDKEKKPGWSKGKPGDQKVKEEEVE 256
+ Q E R + K +++ EEE++++K +KGK +++ KE+E E
Sbjct: 894 EFQRIMTEIKMRAEKKD-EERHLREEEEERQRKEA-AKGKKEEEEKKEKEAE 943
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,040,076
Number of Sequences: 59808
Number of extensions: 224732
Number of successful extensions: 814
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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