Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30008
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.23
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 31 0.30
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.30
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.52
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.91
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.91
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.91
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 1.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 2.8
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.7
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 27 3.7
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 4.8
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 26 6.4
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 8.5
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 8.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.5
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.23
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = -3
Query: 687 KRVCKDYHERIARLEDEKF--DLEYIVKRK-DMEISDLNSQVNDLRGKFVKPTLKKVSKY 517
+RV + Y E++A+ K ++E KRK + E+ + + K K+ +
Sbjct: 554 QRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQ 613
Query: 516 ENKFAKLQKKAAE--FNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 346
+ +L ++AA+ + Q + KK+E + ++EKK + + ++K K++E E
Sbjct: 614 RREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.7 bits (66), Expect = 0.30
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -3
Query: 543 PTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKV 364
PT KK + ++ K + ++ +E N + VK + L+ ++EK P W + +
Sbjct: 531 PTAKKNNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAI 590
Query: 363 KEEEV 349
+ +V
Sbjct: 591 QHSQV 595
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = -3
Query: 555 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPG 376
K K +++++ + ++ A +++K + ++ KK+ ++D+ K D K K G
Sbjct: 49 KMAKRSVEELKRSADEEASVKRKEKKSKHEHKKH---KKDKPSADKDRISKKDKKKSKKG 105
Query: 375 DQKVKEEEVE 346
K KEE +E
Sbjct: 106 KSKTKEESIE 115
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = -3
Query: 729 GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 562
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.1 bits (62), Expect = 0.91
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 474 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 370
+FRNQ+K ++ L E+ KE W +G DQ
Sbjct: 1070 DFRNQIKSQTERILVLREKKKEDPISWMEGTMEDQ 1104
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.91
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 669 YHERIARLEDEKFDLEYIVKRKDMEISDLNS---QVNDLRGKFVKPTLKKVSKYENKFAK 499
+H+ + +DE Y++ K ME +L+ QVN + K +K VS + N +A+
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQVNKIVKKILKKYDSSVSVW-NTYAQ 636
Query: 498 LQKKAAEF 475
L+ + F
Sbjct: 637 LEHLSGAF 644
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.91
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 516 ENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQK--VKEEEVE 346
+N F K E NF + +K K +FT E+K + K P +QK +K+++ E
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE 312
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 687 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYE 514
+R+C+ + + + + +DL++ E S L+ QVNDL + K T +K+S+ +
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSEVQ 953
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 1.6
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = -3
Query: 609 RKDMEISDLNSQVNDLRGKFVKPTLKKVS-KYENKFAKLQKKAAEFNFRNQLKVVKKKEF 433
R ++E +L QVN+L+G V P S ++ N ++ KA ++Q+ K K F
Sbjct: 1423 RLNLEKHNLEKQVNELKGAEVSPQPTGQSLQHVNLAHAIELKA----LKDQINSEKAKMF 1478
Query: 432 TLEEEDKEKKPDWSKGKPGDQKVKEEEV 349
+++ + ++++ + K +KV ++ +
Sbjct: 1479 SVQVQYEKREQELQKRIASLEKVNKDSL 1506
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.9 bits (59), Expect = 2.1
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = -3
Query: 648 LEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK-KVSKYENKFAKLQKK-AAEF 475
LE + L + ++KD +I +L ++NDL + TLK E K + K+ AA
Sbjct: 149 LEKQVKTLHDLNEQKDKKIKELKERINDLTYDY--ETLKANADDSEGKQTLVSKREAALE 206
Query: 474 NFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 346
F+++L ++++ E E K D K + D + + +VE
Sbjct: 207 EFQSKL-LIRENEINKRELKMNGKEDDLKKREKDLENRLLKVE 248
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 576 QVNDLRGKFVKPTLKKVSK-YENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEDKEKKP 400
Q N +RG+ + + K+ K Y+N+ ++K + +++ + + + P
Sbjct: 418 QGNFVRGQKLHLEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPYPTSSRKRTRSP 477
Query: 399 DWSKGKPGDQK 367
SKGK D+K
Sbjct: 478 LMSKGKSYDRK 488
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 528 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE-DKEKK 403
+ K +NK + Q+ + +N+ K+ ++KE EEE D EKK
Sbjct: 1 MGKIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKK 43
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 720 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 601
+NI D++ED I ++ Y + A DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -3
Query: 612 KRKDMEISDLNSQVNDLRGKFVKPTLKK-VSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 436
K+ D I+ S + G+ + P L + + +E++F Q+ AE+ + Q + + +
Sbjct: 1368 KQTDTGITHFRSGMTT-NGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQNRR 1426
Query: 435 FTLEEEDKEKKPDWSKGKP 379
TLE + + W +G P
Sbjct: 1427 LTLE----DLEDSWDRGIP 1441
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 3.7
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Frame = -3
Query: 714 IDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRK-DMEISDLNSQVNDLRGKFVKPT 538
ID A E ++R + E +A++E E+ ++ +R D I + LR K K T
Sbjct: 42 IDPALERRLERKRMEAEEELAKIETEEEGGDFERRRAWDWTIEESEKWDQRLRKK--KQT 99
Query: 537 LKKV--SKYENKFAK-----LQKKAAEFN-FRNQLKVVKKKEFTLEEEDKEKKPDWSKGK 382
++ V S Y ++ +K ++ ++ + K K K ++ D+ ++ DW K
Sbjct: 100 IQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLDWVSNK 159
Query: 381 PGDQKVK 361
P + V+
Sbjct: 160 PDKEHVE 166
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 450 VKKKEFTLEEEDKEKKPDWSKGKPGDQKVKEEEVE 346
++ E+ L++E+KE+K K + +K KE+E E
Sbjct: 275 IESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 309
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 492 KKAAEFNFRNQLKVVKKKEFTLEEEDKEKKPDWSKGKPGDQ 370
KK + R +++ K ++DK KP+ GKP D+
Sbjct: 22 KKPLPLHMRTKIREHLNKSDPTVKDDKSAKPELPFGKPADR 62
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 699 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 568
ED+ + D+H A E+EK + K ME+ ++N V+
Sbjct: 23 EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 622 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 744
+ +++ + K + M V +PL S F+ +N LRF + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 669 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 571
+HE I +L+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,723
Number of Sequences: 5004
Number of extensions: 61395
Number of successful extensions: 232
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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