Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.8  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   5.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   9.8  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   9.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 390 TVTVVVDPNTGERLPLDVAYGR 455
           ++TV +  +TG+RLP + ++G+
Sbjct: 39  SITVPLSISTGQRLPANFSFGQ 60


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 244 KPLSYATSIGNFSPVCGS 191
           KPL   T I  F PVC S
Sbjct: 16  KPLINLTKIFGFLPVCSS 33


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 537  IKSPSTSKVTFSQAPQNFETEPIN 608
            + S +T+ +TF   P   + EPI+
Sbjct: 1404 LTSTTTNSLTFKLKPHESDVEPIH 1427


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 75  SGNKFTLADAAKVGL 119
           +GNK+ +  AAK+GL
Sbjct: 417 TGNKYPILRAAKLGL 431


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 694 VMNPSETAAPTDIGFV 647
           VM+P+ + A TDIG V
Sbjct: 25  VMSPANSLASTDIGDV 40


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 768 LFCLMPVLLSLACYQQI 718
           +F ++PV+L+  CY  I
Sbjct: 501 IFIIIPVILTSVCYFMI 517


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,114
Number of Sequences: 336
Number of extensions: 3961
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)