Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140...    34   0.17 
02_05_1082 - 33976038-33978035                                         29   6.6  
01_06_0025 - 25716563-25718332                                         29   6.6  
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    28   8.7  

>01_06_0835 -
           32312264-32312884,32313529-32313642,32313739-32314029,
           32314135-32314443,32315194-32315931
          Length = 690

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = -3

Query: 868 DSIGISGVFSLTAATLYLGFKLALII*ITSGGLSFLSNACVVITRLLSADRL 713
           D + + G+F+   A+ +L  +L  +    + GL FL+NACVV+  + SADRL
Sbjct: 146 DLLAVEGLFAAAYAS-WLRVRLEYL----APGLQFLANACVVLFLIQSADRL 192


>02_05_1082 - 33976038-33978035
          Length = 665

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -3

Query: 832 AATLYLGFKLALII*I--TSGGLSFLSNACVV 743
           +ATLYLG+ L ++I I   +G + F+S+ C V
Sbjct: 624 SATLYLGYSLFMVIAIMLATGTVGFISSFCFV 655


>01_06_0025 - 25716563-25718332
          Length = 589

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 678 SEGFITVESIQNSLSADNRRVITTQAL-DKKDKPPEVIQIIKANLKPKYKVAAVRENTPD 854
           S+G     S     SA+ RRVI   AL DK   PP    +  A  +  ++   V  N   
Sbjct: 278 SDGSSVTVSFGTLYSAEARRVIVYLALADKTASPPYDANVCLAQYRFTFQAQQVTSNPDL 337

Query: 855 IPIESKP 875
           I I+ +P
Sbjct: 338 ITIKRRP 344


>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 729 NRRVITTQALDKKDKPPEVIQIIKANLKPKYKVAAVRENTP 851
           N++ I  Q  D+K  P   +    A L+ KYK  A  EN P
Sbjct: 811 NQKYILPQLCDQKGHPHCTVHASLAALEFKYKYKAASENPP 851


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,344,479
Number of Sequences: 37544
Number of extensions: 383785
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)