Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30006
(891 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 31 1.7
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 30 2.9
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.1
SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7) 29 5.1
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 29 6.7
SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07) 29 6.7
SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1) 29 6.7
SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05) 28 8.8
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 381 GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVS-----DQKPGSITYHD--- 536
G A + V D +T + + V Y G + Y+ V S++ +K + D
Sbjct: 205 GTADLPVTRDGDTSTTVTISVTYTPGTATGLDYEDTVTSITFAPGDTEKFIQVPIVDDQL 264
Query: 537 IKSPSTSKVTFSQAPQNFETEP 602
++SP T KVT S N TEP
Sbjct: 265 VESPETFKVTISSTLPNVPTEP 286
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +3
Query: 381 GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVS-----DQKPGSITYHD--- 536
G A + V D +T + + V Y G + Y+ V S++ +K + D
Sbjct: 1532 GTADLPVTRDGDTSTTVTISVTYTPGTATGLDYEDTVTSITFAPGDTEKFIQVPIVDDQL 1591
Query: 537 IKSPSTSKVTFSQAPQNFETEP 602
++SP T KVT S N TEP
Sbjct: 1592 VESPETFKVTISSTLPNVPTEP 1613
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 441 VAYGRGLIDPVSYKKYVLSVSD-QKPGSITYHDIKSPSTSKVTFSQAPQNFETEPIN 608
VA+ L DP S+ K + + D GS++Y + ++ +++ P NF++E I+
Sbjct: 753 VAFEALLRDPDSHHKLIFQLFDLDGKGSVSYDEFRNVIQKTTFYNKIPFNFDSEFIS 809
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 12 TLQQAIAKRIIDRKTGDYIDNSGNKFTLA 98
TLQQ + R+ + T D++ NS +KFT A
Sbjct: 3547 TLQQGVVVRLRNTNTRDFLANSYHKFTSA 3575
>SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 225 VAYERGLVDPDTYKRYEEEIR 287
V Y + + DP+ KRYEEEIR
Sbjct: 32 VEYAQEISDPENKKRYEEEIR 52
>SB_53815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
P+ + + VV + + + P+ + Y GLV+P Y Y +E+R+R
Sbjct: 292 PVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYLYYSKELRNR 344
>SB_4680| Best HMM Match : ATP_synt_H (HMM E-Value=7.7)
Length = 85
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
P+ + + VV + + + P+ + Y GLV+P Y Y +E+R+R
Sbjct: 26 PVFTVTAIYSVVDTKVTLTESLAIDYPLALIVYANGLVNPIIYLYYSKELRNR 78
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 577 HLRTLRLNP*IYRIVKQLLFHIRPQNQYQ*VQLFLKDSLQ*NQFKIVYLLIT 732
H R LR +P YR+++ FH R + + +F L F ++ L IT
Sbjct: 1079 HYRVLRHHPFHYRVLRHHPFHYRVLRHHPFITVFSVIILFITVFSVIILFIT 1130
>SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)
Length = 491
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 242 APFICYLHR*FFSRLWINYHSTPYNLNNFRSRN*RCTYNSYQTYFCSIC*SKFI 81
AP Y+ R F W+ + + P+ L++F + CT +Y T+ SK+I
Sbjct: 191 APLRLYVDRVF----WLRFANKPFALDHFEEYDRHCTVMNYGTHKLKQITSKYI 240
>SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)
Length = 143
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 138 PLVAASKVIQVVRSTMVVDPQTGEKLPME-VAYERGLVDPDTYKRYEEEIRDR 293
P+ A+ + VV + + + + + + Y GLV+P Y Y +E+R+R
Sbjct: 84 PVFTATAIYSVVDTEITLSASLAIEYALTLIVYANGLVNPIIYLYYSKELRNR 136
>SB_31048| Best HMM Match : zf-CCHC (HMM E-Value=5.5e-05)
Length = 601
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 21 QAIAKRIIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVI 164
QAI + +I +T Y D +ADA+ VGL AV+ KV+
Sbjct: 332 QAIKRVMIASETLAYFDRQAETLVVADASPVGLGAVLIQKQGGTEKVV 379
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,048,575
Number of Sequences: 59808
Number of extensions: 466134
Number of successful extensions: 1151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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