Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P...    86   7e-17
AF200424-1|AAF24342.1|  877|Drosophila melanogaster Short stop/K...    37   0.033

>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
            isoform H protein.
          Length = 8805

 Score = 85.8 bits (203), Expect = 7e-17
 Identities = 43/87 (49%), Positives = 59/87 (67%)
 Frame = +3

Query: 9    ITLQQAIAKRIIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVIQVVRSTMV 188
            I++ +AIA+ I D KT   +D+ G    L  A K+GL++VVGAPLVAA   ++ VR   V
Sbjct: 2346 ISVTEAIARSIYDPKTATILDSEGQPVDLITATKLGLLSVVGAPLVAAEGALRTVR--FV 2403

Query: 189  VDPQTGEKLPMEVAYERGLVDPDTYKR 269
             DP+TGE++P+EVAYERG+V  D   R
Sbjct: 2404 TDPRTGEQIPVEVAYERGIVSRDQLHR 2430



 Score = 39.5 bits (88), Expect = 0.006
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 186  VVDPQTGEKLPMEVAYERGLVDPDTYKRYEEEIRDRTLESDKPRSEHXXXXXXXXXXXXX 365
            +VDP T + + +  A  R + DP T    + E +   L +                    
Sbjct: 2337 IVDPTTKQPISVTEAIARSIYDPKTATILDSEGQPVDLIT-------ATKLGLLSVVGAP 2389

Query: 366  XXSPEGAA-TVTVVVDPNTGERLPLDVAYGRGLI 464
              + EGA  TV  V DP TGE++P++VAY RG++
Sbjct: 2390 LVAAEGALRTVRFVTDPRTGEQIPVEVAYERGIV 2423



 Score = 37.1 bits (82), Expect = 0.033
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 9    ITLQQAIAKRIIDRKTGDYIDN-SGNKFTLADAAKVGLIAVVGAPLVAASKVIQVVRSTM 185
            ITLQ+A+   +++ KTG Y++  +  K T A+A    LI V    L     +  + +   
Sbjct: 1717 ITLQEALQSGVLNAKTGRYVNEVTKEKLTFAEARNRQLI-VKPYTLKDICDLNLLDKQAQ 1775

Query: 186  VVDPQTGEKLPMEVAYERGLVDPDTYK 266
            +  P   EKL +  A E G++D +  K
Sbjct: 1776 ITSPMRREKLSIMQAIEAGVLDGNLLK 1802



 Score = 36.3 bits (80), Expect = 0.057
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +3

Query: 3    KFITLQQAIAKRIIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVI--QVVR 176
            K++ L  AI ++++D   G Y  N GN+     AA+   + V    L++   V+  Q+ R
Sbjct: 4466 KYLRLANAIKEQLVDDSRGCY--NLGNEQLDLQAARARGLIVSNRRLLSLELVLRQQLYR 4523

Query: 177  --STMVVDPQTGEKLPMEVAYERGLVDPDT 260
              +    DP TGE L +  A   G +DP T
Sbjct: 4524 PETGKFCDPTTGEYLDLIEAIHSGFIDPAT 4553



 Score = 33.1 bits (72), Expect = 0.53
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +3

Query: 99   DAAKVGLIAVVGAPLVAASKVIQVVRSTMVVDPQ 200
            DAAK+G +A+VGAP++A   ++  + +   + P+
Sbjct: 3455 DAAKLGALAIVGAPVLAGKALVDALTTEKTLKPE 3488



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 177  STMVVDPQTGEKLPMEVAYERGLVD 251
            S  V+DP TG+K+ ++ A+ER ++D
Sbjct: 2189 SLSVIDPNTGDKISVQSAFERDILD 2213



 Score = 31.1 bits (67), Expect = 2.1
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +3

Query: 18   QQAIAKRIIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVIQVVRSTMVVDP 197
            + A+ K IID +T + ++N+ N FT      V +   +   L+         R   V+DP
Sbjct: 2459 KDALRKGIIDEETCEILENTSN-FTNPKGEVVNITEALNTGLIDG-------RRGQVIDP 2510

Query: 198  QTGEKLPMEVAYERGLVDPD 257
            Q    L +  A E+ ++D +
Sbjct: 2511 QNNRVLNLRQAVEQKIIDSE 2530



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 186  VVDPQTGEKLPMEVAYERGLVDPD 257
            ++DP+TGE +P++ A ER  + P+
Sbjct: 1952 LLDPKTGETVPLDTAIERKFITPE 1975



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 39   IIDRKTGDYIDNSGNKFTLADAAKVGLIAVVGAPLVAASKVIQVVRSTM---VVDPQTGE 209
            I+D K G   D   +     +A   G++     PL     V++ V   +    VDP++GE
Sbjct: 4181 IVDSKHGTVRDADDHPIDFKEAFDRGILVEAKKPLRLIEAVVKNVYDEVDGHFVDPKSGE 4240

Query: 210  KLPMEVAYERGLVD 251
            KL    A    L+D
Sbjct: 4241 KLNFAEALNTNLLD 4254



 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 402  VVDPNTGERLPLDVAYGRGLIDPVSYKKYVLS 497
            V+DPNTG+++ +  A+ R ++D  SY  Y  S
Sbjct: 2192 VIDPNTGDKISVQSAFERDILD--SYGNYTNS 2221



 Score = 29.5 bits (63), Expect = 6.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 99   DAAKVGLIAVVGAPLVAASKVIQVVRS 179
            DAAK+G + V+ AP++A   ++  V+S
Sbjct: 2892 DAAKLGALGVIAAPVLAGGAIVSGVKS 2918



 Score = 29.5 bits (63), Expect = 6.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 396  TVVVDPNTGERLPLDVAYGRGLID 467
            TVV DP+TG  +PL  A   GLID
Sbjct: 4882 TVVRDPSTGVIVPLTAAISSGLID 4905



 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 402  VVDPNTGERLPLDVAYGRGLIDP 470
            ++DP TGE +PLD A  R  I P
Sbjct: 1952 LLDPKTGETVPLDTAIERKFITP 1974


>AF200424-1|AAF24342.1|  877|Drosophila melanogaster Short
           stop/Kakapo truncated isoformprotein.
          Length = 877

 Score = 37.1 bits (82), Expect = 0.033
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 9   ITLQQAIAKRIIDRKTGDYIDN-SGNKFTLADAAKVGLIAVVGAPLVAASKVIQVVRSTM 185
           ITLQ+A+   +++ KTG Y++  +  K T A+A    LI V    L     +  + +   
Sbjct: 555 ITLQEALQSGVLNAKTGRYVNEVTKEKLTFAEARNRQLI-VKPYTLKDICDLNLLDKQAQ 613

Query: 186 VVDPQTGEKLPMEVAYERGLVDPDTYK 266
           +  P   EKL +  A E G++D +  K
Sbjct: 614 ITSPMRREKLSIMQAIEAGVLDGNLLK 640


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,875,598
Number of Sequences: 53049
Number of extensions: 686547
Number of successful extensions: 2182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)