Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30006
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putativ...    33   0.34 
At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putativ...    33   0.34 
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    32   0.59 
At3g47230.1 68416.m05128 expressed protein                             31   0.78 
At1g47670.1 68414.m05296 amino acid transporter family protein s...    31   0.78 
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329...    28   7.2  
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329...    28   7.2  
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ...    28   7.2  

>At4g03205.1 68417.m00438 coproporphyrinogen III oxidase, putative /
           coproporphyrinogenase, putative / coprogen oxidase,
           putative
          Length = 233

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 381 GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVSDQKPGSITYHDIKSPSTSK 560
           G     ++ D N  E+  ++V+   G++ P +Y+    + S+QKPG I +    +  TS 
Sbjct: 119 GGGISRILQDGNVWEKAGVNVSVIYGVMPPEAYRAAKAATSEQKPGPIPFF---AAGTSS 175

Query: 561 VTFSQAP 581
           V   Q P
Sbjct: 176 VLHPQNP 182


>At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putative /
           coproporphyrinogenase, putative / coprogen oxidase,
           putative similar to coproporphyrinogen III oxidase,
           chloroplast [precursor] from Glycine max [SP|P35055],
           Nicotiana tabacum [SP|Q42946], Hordeum vulgare
           [SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains
           Pfam domain coproporphyrinogen III oxidase, aerobic
           [PF01218]
          Length = 362

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 381 GAATVTVVVDPNTGERLPLDVAYGRGLIDPVSYKKYVLSVSDQKPGSITY 530
           G     V+ D N  E+  ++V+   G++ P +Y+    S SDQKPG + +
Sbjct: 119 GGGISRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAAKGSASDQKPGPVPF 168


>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 207 EKLPMEVAYERGLVDPD-TYKRYEEEIRD 290
           + LPME+   RG VDP+ T K YEE +RD
Sbjct: 425 KSLPMEMDDSRGRVDPEKTDKEYEEFLRD 453


>At3g47230.1 68416.m05128 expressed protein
          Length = 277

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 432 PLDVA-YGRGLIDPVSYKKYVLSVSDQKPGSITYHDIKSPST 554
           PLD+  +GR +  PVSY      VSD +   +  + I SPS+
Sbjct: 148 PLDLTPFGRDISSPVSYHSQPTRVSDDRTNQLGQYLISSPSS 189


>At1g47670.1 68414.m05296 amino acid transporter family protein
           similar to lysine and histidine specific transporter
           GI:2576361 from [Arabidopsis thaliana]; contains Pfam
           profile PF01490: Transmembrane amino acid transporter
           protein
          Length = 519

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 456 GLIDPVSYKK--YVLSVSDQKPGSITYHDIKSPSTSKVTFS 572
           G +  ++Y    +VLSVS  +P +I+Y  +  PSTS   F+
Sbjct: 251 GAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFA 291


>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 792 IIKANLKPKYKVAAVRENTPDIPIESKPVI 881
           + K ++KP   VA  +E+TP   IE KP I
Sbjct: 51  LAKVSVKPPLNVATEKESTPPKKIEYKPEI 80


>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 440

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 792 IIKANLKPKYKVAAVRENTPDIPIESKPVI 881
           + K ++KP   VA  +E+TP   IE KP I
Sbjct: 51  LAKVSVKPPLNVATEKESTPPKKIEYKPEI 80


>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
           protein contains Pfam domain PF00076: RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 461

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 432 PLDVA-YGRGLIDPVSYKKYVLSVSDQKPGSITYHDIKSPSTSKVTFSQAPQNFETEPIN 608
           PLDV  +GR    PVSY      VS  +   +  + I SPS+ +++     +N +    N
Sbjct: 233 PLDVTPFGRDTSSPVSYHSPPARVSADRTTQLGQYLISSPSSVELSGVSETKNLDAADKN 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,003,320
Number of Sequences: 28952
Number of extensions: 328663
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)