Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30002
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    30   0.40 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.1  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   5.0  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    26   5.0  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   5.0  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   5.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   6.6  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   6.6  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +3

Query: 138 LTNLMKKMLSYGQYNMDKYTYV 203
           LTN +K+++SY +YNM + TY+
Sbjct: 193 LTNYLKEVISYRKYNMMEETYI 214


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 345 KVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFM 470
           K +KI   +L  F  EYD+D S+ +     +  N   D  F+
Sbjct: 367 KAQKINIGQLNRFFSEYDLDASDFLSSSVHKNNNSYLDQYFL 408


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 308 REHVLENGEDVANSFHDHPEDR 243
           ++H++EN   +A+ FH+  E +
Sbjct: 26  KDHIVENSSPIASKFHEFDEQK 47


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +3

Query: 282 FTVFKNMLP--KYTREQFSFPGVKVEKITTDELVTF--VDEYDMDISNAMYLDATEMQNK 449
           +++F  + P  KY  +     GV V       +     +  YD + S A  L+A +M N 
Sbjct: 146 YSLFSTLAPNLKYFPDWLKEAGVSVSDHRAFNIFVSKAIQSYDDEQSFAFLLEAVKMDNS 205

Query: 450 TSDMTFMARMRRLNHHP 500
           T+D      ++R  + P
Sbjct: 206 TADEAVRELVQRAVNSP 222


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 263 ETSLQHLHRFQEHAPEIYSRTVQLPRSQSGENYHR 367
           +   QHLH    H+ +I + T +LP   S E + +
Sbjct: 291 DVDCQHLHSLDTHSLDISTHTFKLPPLMSKEVFQQ 325


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/73 (20%), Positives = 33/73 (45%)
 Frame = +3

Query: 309 KYTREQFSFPGVKVEKITTDELVTFVDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRL 488
           KY       P V ++   TDE+ +F+     D+ NA+ +D  +     + +  +  +  L
Sbjct: 76  KYVASVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVVIL 135

Query: 489 NHHPFQVSIDVMS 527
           +  P++  +  +S
Sbjct: 136 SSSPYENILSALS 148


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 226 LPVSAILS--SG*S*NEFATSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHS 384
           LP S + S  S  S +    S+  S     N+L N + +P       PP++WS S
Sbjct: 55  LPSSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNKPPLTWSPS 109


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 236 PRSCLLDDHETSLQHLHRFQEHAPEIYSRTV 328
           P+  +L  HE S++HL R  E A +     V
Sbjct: 133 PKEKILTAHEASVRHLRRLTESAEDFLGTKV 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,026
Number of Sequences: 5004
Number of extensions: 60957
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)