Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30002
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 32 0.56
03_02_0164 - 6066744-6067637 31 0.74
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 31 0.97
10_08_0655 - 19621717-19622594,19623186-19623227,19624323-196244... 30 1.7
03_01_0344 + 2704860-2705156,2705249-2705494 29 3.0
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 3.9
12_02_1157 + 26565040-26565081,26565189-26565262,26565343-265654... 29 5.2
10_01_0105 + 1287423-1289924 29 5.2
01_06_0397 + 29017608-29018510,29018751-29019083 29 5.2
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 28 6.9
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 28 9.1
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 28 9.1
>01_03_0075 - 12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 31.9 bits (69), Expect = 0.56
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Frame = +3
Query: 276 NIFTVFKNMLPKYTREQFSFPGVKVE-KITT---DELVTFVDEYDMDISNAMYLDATEMQ 443
NIF +F + + F + +E K+ T DE V+ Y DI ++ + E+
Sbjct: 811 NIFRIFGGDRIQGLMQAFRVEDLPIESKMLTRALDEAQRKVENYFFDIRKQLF-EYDEVL 869
Query: 444 NKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDAVVRIFLGPKYDCMGRLMSVNDKRLDM 623
N D + R R L + I ++ T+D ++ +GP +S +L
Sbjct: 870 NSQRDRVYAERRRALASDSLESLIVEYAELTIDDILEANIGPDTPREDWDLSKLIAKLQQ 929
Query: 624 --FELDSFMYKLVNGKNTIVRSSMDMQGFIPEYLSTR 728
+ LD +L+ GK++ S D+Q EYL TR
Sbjct: 930 YCYLLDDLTPELLEGKSS---SYEDLQ----EYLRTR 959
>03_02_0164 - 6066744-6067637
Length = 297
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +2
Query: 536 CRCCGPHLPGSQ-VRLHGQAHERQRQTPRHVR-----AGQLYVQTGQRKEHHRP*LHGYA 697
C C H P SQ + H AH+R+RQ + V+ A +G HH L GY
Sbjct: 103 CHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQTAMAAAAAAASGAHHHHHHHQLLGYP 162
Query: 698 RIYPR 712
+ + R
Sbjct: 163 QHHHR 167
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 31.1 bits (67), Expect = 0.97
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = +2
Query: 467 YGPHAPPQSPSVPGVD*CHVRQNCRCCGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYV 646
YGPH + S V +R+ R +R R+R+ PR R + V
Sbjct: 32 YGPHVSDTTASCTRVRRSRLREFARDRFRDPFNPDLRRREPRRRRRRRAPRRRRKAMMPV 91
Query: 647 QTGQRKEHH-RP*LHGYARIYPRV 715
+T HH H RI PRV
Sbjct: 92 RTYHHHHHHNNSNNHRLRRIIPRV 115
>10_08_0655 -
19621717-19622594,19623186-19623227,19624323-19624479,
19625333-19625405,19625483-19625595
Length = 420
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 222 TCPRKSARRCTCPCCIGH 169
TCPR +AR C+ PC GH
Sbjct: 47 TCPRCNARYCSLPCYKGH 64
>03_01_0344 + 2704860-2705156,2705249-2705494
Length = 180
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 134 PLDQLDEENAELWPIQHGQVHLRADFLGHVHYLSPRSCLLDDHETSLQHLHRFQEHAPEI 313
PL Q ++ + W I+H G Y +PRS D TSLQ ++ F E
Sbjct: 124 PLLQHQQQQQQAWQIEHESTMTSTQSSGC--YSAPRS----DGSTSLQDMYCFGEQEEGS 177
Query: 314 YSR 322
YSR
Sbjct: 178 YSR 180
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 218 HVHYLSPRSCLLDDHETSLQHLHRFQEH 301
HVHY++P D E L LH F +H
Sbjct: 117 HVHYVAPSFWAWKDGERRLAKLHNFVDH 144
>12_02_1157 +
26565040-26565081,26565189-26565262,26565343-26565460,
26565547-26565617,26565704-26565869,26565946-26566145,
26566669-26566880,26567404-26567522,26567952-26568053,
26568144-26568253,26568340-26568427,26568574-26568606,
26568635-26568834,26568916-26569120
Length = 579
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 327 FSFP--GVKVEKITTDELVTFVDEYDMDISNAMYLDA-TEMQNKTSDM 461
FS P +VE++T D+L+ + ++ A+++DA +E+ N T +
Sbjct: 338 FSMPLCNTEVEQVTEDDLIELSEIQKRNLGQALHIDAMSEVDNTTQSL 385
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +3
Query: 402 DISNAMYLDATEMQN--KTSDMTFMARMRRLNH 494
++SN YLD +EMQN ++D+++++R+ L +
Sbjct: 179 NLSNLRYLDVSEMQNVVYSTDLSWLSRLHLLEY 211
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -1
Query: 698 LHIHGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLGTQEDADHSIDSFVGHD 519
+H+H T L +D ++ + + F+ HEP V+ + ADH ID V
Sbjct: 76 MHVHATTS---LKMDMSGSLSIIVGQLLPFL---HEPFRQVLKRLRWTADHEIDR-VNLT 128
Query: 518 INRHLERMVIEAAHA 474
+ R L+R+V E A
Sbjct: 129 LGRQLDRIVAERTAA 143
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -1
Query: 353 LHFDSGEAELFASIFRE-HVLENGEDVANSF---HDHPEDRIAETGSVHVQGSRH 201
L F S E FA+I E VL++ D+A S + PE +E G + ++GSRH
Sbjct: 569 LKFLSQVFENFAAILSELDVLQSFADLATSSPIPYVRPEITASEEGDIILEGSRH 623
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 533 NCRCCGPHLPGSQVRLHGQAHERQRQTPRH 622
+C G HL G+QV Q H R P H
Sbjct: 113 DCIVAGDHLRGAQVAASYQRHVRDNPNPSH 142
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 90 VLGGLEIVGDDAKVIHLTNLMKKMLSYGQYNMDKYTYVPTSLDMYTTCLRDPVF--WMIM 263
V+ +E VG + K + ++M+SY + TY+P +++ C+R+P F W +
Sbjct: 138 VVREIEAVGGNVKA----SANREMMSYSYAALK--TYMPEMVEVLIDCVRNPAFLDWEVK 191
Query: 264 KRVCNI 281
+++ +
Sbjct: 192 EQIMKL 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,002
Number of Sequences: 37544
Number of extensions: 440393
Number of successful extensions: 1339
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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