Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h1000
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 1.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.8
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.8
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 2.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 3.1
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 25 7.2
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 7.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 9.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.5
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/57 (19%), Positives = 29/57 (50%)
Frame = +1
Query: 148 SYCDHWFSFVIPYSFLSYTTSIIFEDHVTRVYHVTMDIVIQAVVSLFAVMWGVLNVA 318
S+ + W + + Y+ ++ +I VYH++ ++ ++ ++ +W +LN A
Sbjct: 85 SWWEAWITVWVGYTIAAFILTIA--GRAGAVYHISFPVLSRSSFGIWGSLWPILNRA 139
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 39 TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 137
TL CI+ F+ N QFA+ F V R ++ WL
Sbjct: 1356 TLTALCISPFLYNPHQFAWTDFFVDYREFMRWL 1388
>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 85
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 126 CTL**QLKMNKMQIVINYLQIQQYNAASMCLIYKIATHYK 7
C L L+ NK ++I YL I+ ++A MC+ + + + K
Sbjct: 46 CLLNFSLRENKNYLIIVYLPIEGFSANHMCISHGTSFNIK 85
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 24 FYKLDTLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 137
++ + TL CI+ F+ N QF++ F V R +I WL
Sbjct: 1510 YFWISTLAM-CISPFIFNPHQFSWTDFFVDYREFIRWL 1546
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 39 TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 137
++M C+A F+ N QF + F V R +I WL
Sbjct: 1540 SIMALCVAPFLFNPHQFDWNDFFVDYREFIRWL 1572
>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 217 FEDHVTRVYHVTMDIVIQAVVSLFAVMWGVLNVAGN 324
F D T Y+ + I + + +LF W N+A N
Sbjct: 192 FRDFDTMFYNNLLSIPVLVICTLFTEDWSAENIAQN 227
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 318 RHIQHSPHDSKQTDHSLDDNIHGNVVNSCDVILK 217
+HI + P D + + SLDD ++ ++ D IL+
Sbjct: 164 KHITYKPKDEEFWNFSLDDMAMFDIPDTVDYILR 197
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 395 NEGRLFCVSHLIAFNSAAAGISRRLPATFNTPHMTANKLTTAWMTISMVT 246
N G F V F + G+S+R AT TP + +T+A ++ ++
Sbjct: 184 NNGPNFPVEKATFFLESNMGLSQRAAATSTTPVCNISSVTSAINSVGEIS 233
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 367 WETQNNLPSFYIFNHRGKALSYDYVPT 447
WE+ N+P+FY R K + + +V T
Sbjct: 2127 WESPGNIPAFYTALLRRKLVLWFFVAT 2153
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 39 TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 137
T+ I F+ N QF+F F V R ++ WL
Sbjct: 1448 TMFALVICPFIYNPHQFSFVDFFVDYREFLRWL 1480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,903
Number of Sequences: 5004
Number of extensions: 50940
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -