Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h1000
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    37   0.012
04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562...    31   1.1  
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162...    29   2.4  
10_05_0062 + 8694431-8694877                                           29   4.2  

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 23/61 (37%), Positives = 31/61 (50%)
 Frame = +1

Query: 253 MDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKALSY 432
           MD+++Q ++ L   MW  L V      +   +E N I      NL  F IFNHRG+AL  
Sbjct: 41  MDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIV-SLPANL-DFMIFNHRGRALPS 98

Query: 433 D 435
           D
Sbjct: 99  D 99



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +2

Query: 149 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPWILSSKLWSVCLLSCGEC*MW 316
           V+ ++G   L H A++  Q+R+ L+IT +EF++ P  +  +L    LL    C MW
Sbjct: 6   VLGVLGGALLAHAAYATIQYRAVLKITEEEFSSPPMDVMMQL----LLGLALC-MW 56


>04_03_0616 -
           18052596-18053779,18053935-18054099,18056236-18056260,
           18057259-18057312,18057354-18057619,18058633-18059371
          Length = 810

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 168 FFRYSIQLSQLHNIDHI*GSRHKSLPRYHGYCHPSCGQFVC-CHVGS 305
           +F+ +IQL  LH    I   +  +    HG CH   G F C C  GS
Sbjct: 347 YFKNNIQLGGLHGRKDINECQDSNNYPCHGECHNKPGDFDCFCRAGS 393


>02_05_0710 -
           31115116-31115214,31115747-31115851,31116210-31116260,
           31116393-31116494,31116651-31116883,31117306-31117497,
           31118142-31118322,31118424-31118623,31119105-31119645
          Length = 567

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 494 KIKNR*FCTFCICYILKIGKFCHIQQIVNDNDVMYLGILPVTVKPLEKL 640
           K+K R   T  +  +L IG  C I  +  D+D  + G+LPV    L  L
Sbjct: 157 KLKKRGSDTKYLATVLAIGTECDIALLTVDDDEFWEGVLPVEFGSLPAL 205


>10_05_0062 + 8694431-8694877
          Length = 148

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 347 AAAGISRRLPATFNTPHMTANKLTTAWMTISMVTW 243
           AAA  +  LPAT     M A  ++  WM ++M  W
Sbjct: 110 AAATAAPLLPATATAAPMQAVTVSVVWMCLAMAAW 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,924
Number of Sequences: 37544
Number of extensions: 298462
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)