Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0995
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    28   0.68 
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   1.2  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    27   2.1  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    27   2.1  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.6  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    25   6.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   6.3  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   8.4  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   8.4  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   8.4  
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    25   8.4  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   8.4  

>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 25  TVRLLGFLAT*GRPPGSKNKKLKSSNADQS 114
           T RL    +  G P GS+NKK KS N++ S
Sbjct: 74  TKRLYESTSAEGYPSGSRNKKSKSENSEAS 103


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +3

Query: 258 CGKKFKFKKSYLQHIELNHSTLP--NSVACTKS--KIWCPNETVLKGHIETIHK-RASYV 422
           CG++FK       H+ L+ +TL    +  C     K      + LK HI  IH+   ++ 
Sbjct: 209 CGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFH 268

Query: 423 CPEC 434
           C  C
Sbjct: 269 CDSC 272


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 151 YVCTMCKKSCDEDKWESHVEICR 219
           Y C MCK+     ++ +H+E C+
Sbjct: 72  YSCLMCKREIAASRYAAHLEKCK 94


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 490 YSHSCHMTSYMRPSYNSLLHSGHTYEALLCIVSMCPFRTVSFGHHILLFVQATLLGN 320
           Y +  H+  Y R +YN +LH  ++++A      +   R    G HI ++V   L  N
Sbjct: 171 YLYKNHLEVYGRTTYNIVLH--NSWQASWFKSMLTSVRYAKHGDHIDIYVSDPLTWN 225


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 428 WAYIRSSFVYCLYVSLQNSFIWTPYF 351
           W + + +++  L  SLQ    WTP F
Sbjct: 75  WGWWKKAYIVLLSTSLQMYVFWTPNF 100


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 341 HKK*NMVSK*NCSEGTHRDNTQKSFVCMPRMQQ 439
           +KK   V K N   GT+RD+  K +V +P ++Q
Sbjct: 58  YKKDGDVKKMNLGAGTYRDDAGKPYV-LPSVRQ 89


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = +1

Query: 166 CKKSCDEDKWESHVEICRI 222
           C K C    W  H   CR+
Sbjct: 507 CSKECQHQAWPGHSRWCRV 525


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 264 KKFKFKKSYLQHIELNHS 317
           KKFK K+SYL+ I  N S
Sbjct: 123 KKFKIKESYLEWIGENQS 140


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 255 ECGKKFKFKKSYLQHIELNHSTLPNSVACTKSKIWCPNETVLKGHIETIHKRAS 416
           EC KKFK  +   +HI   H T      C   K +   +  L+ H E +H  AS
Sbjct: 427 ECSKKFKRSEHLRRHIRSLH-TSEKPFVCICGKRFSRRDN-LRQH-ERLHVNAS 477


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 276 FKKSYLQHIELNHSTLPNSVACTK 347
           F   +LQ   L+ STLP  +AC K
Sbjct: 334 FSFDFLQKASLHSSTLPIHLACKK 357


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 109 QSIDIKQEVNSGRVYV 156
           QSI    EVN GR+YV
Sbjct: 132 QSIKYNSEVNEGRIYV 147


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 454 PSYNSLLHSGHTYEALLCI 398
           PSY+  L+  HTY+ + C+
Sbjct: 301 PSYSFSLNCSHTYQPVSCV 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,783
Number of Sequences: 5004
Number of extensions: 41555
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)