Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0995
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.11 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.33 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.58 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   0.77 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.3  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 258 CGKKFKFKKSYLQHIELNHSTLPNSVACTK-SKIWCPNETVLKGHIETIHK 407
           CGK    K S  +H+   H+       C    +++C   +++  HI T HK
Sbjct: 11  CGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMT-HIYTYHK 60


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 282 KSYLQHIELNHSTLPNSVACTKSKIWCPNETVLKGHIETIHKRASYVCPEC 434
           K +L++   NH        C K    C N+++L  H+++      Y C  C
Sbjct: 1   KHHLEYHLRNHFG-SKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANC 50


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 282 KSYLQHIELNHSTLPNSVACTKSKIW-CPNETVLKGHI-ETIH 404
           K Y  H EL+ +   +  + TKS++  C +  +   HI  T+H
Sbjct: 123 KIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTLH 165


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 416 RSSFVYCLYVSLQNSFIWTPYFTFC 342
           R++F Y   V+L+N F  T Y + C
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVC 36


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 43  FLAT*GRPPGSKNKKLKSSNADQSIDIKQEVNSG 144
           +L   G PP SK  KLK         +K++   G
Sbjct: 422 YLLELGFPPRSKKNKLKKPRQGDGAAVKRKSREG 455


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 375 VLKGHIETIHKRASYVCPECNK 440
           +L+GHI T      + C  CN+
Sbjct: 57  LLQGHIRTHTGEKPFSCQHCNR 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,006
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)