Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0993
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...    87   7e-18
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    87   1e-17
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    66   2e-11
01_06_0048 + 25951544-25952074                                         28   4.5  
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564...    28   5.9  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    27   7.8  
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107...    27   7.8  
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39...    27   7.8  
08_01_0669 - 5767689-5767791,5768512-5768630,5769084-5769271,576...    27   7.8  

>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 35/85 (41%), Positives = 56/85 (65%)
 Frame = +3

Query: 3   QLREYXVIGRKXPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 182
           +  +Y V+GR  P+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+   
Sbjct: 5   RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64

Query: 183 XXXXXXXXXXXNFGIWLRYESRSGY 257
                      N+GIWLRY+SR+GY
Sbjct: 65  EIFEKNPTTIKNYGIWLRYQSRTGY 89



 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 28/63 (44%), Positives = 34/63 (53%)
 Frame = +2

Query: 257 HNMYREYRDLSVGXAVTQCYRDMXXXXXXXXXSIQIIKVEVIXAAXCXRPQVKQFHNSTI 436
           HNMY+EYRD ++  AV Q Y +M          IQIIK   +    C R   KQFH S I
Sbjct: 90  HNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDI 149

Query: 437 RFP 445
           +FP
Sbjct: 150 KFP 152


>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 34/85 (40%), Positives = 56/85 (65%)
 Frame = +3

Query: 3   QLREYXVIGRKXPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 182
           +  +Y V+GR  P+  +  P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++   
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64

Query: 183 XXXXXXXXXXXNFGIWLRYESRSGY 257
                      N+GIWLRY+SR+GY
Sbjct: 65  EIFERNPTTIKNYGIWLRYQSRTGY 89



 Score = 64.1 bits (149), Expect = 7e-11
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +2

Query: 257 HNMYREYRDLSVGXAVTQCYRDMXXXXXXXXXSIQIIKVEVIXAAXCXRPQVKQFHNSTI 436
           HNMY+EYRD ++  AV Q Y +M          IQIIK   +    C R   KQFHNS I
Sbjct: 90  HNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNSNI 149

Query: 437 RFP 445
           +FP
Sbjct: 150 KFP 152


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 17/102 (16%)
 Frame = +3

Query: 3   QLREYXVIGRKXPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 131
           +  +Y V+GR  P+  +  P +Y+M++++ + + AKS+F          W       YFL
Sbjct: 5   RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64

Query: 132 RQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGY 257
           R+LKK KK+ G+++              N+GIWLRY+SR+GY
Sbjct: 65  RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGY 106



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/63 (44%), Positives = 35/63 (55%)
 Frame = +2

Query: 257 HNMYREYRDLSVGXAVTQCYRDMXXXXXXXXXSIQIIKVEVIXAAXCXRPQVKQFHNSTI 436
           HNMY+EYRD ++  AV Q Y +M          IQIIK   +    C R   KQFHN +I
Sbjct: 107 HNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSI 166

Query: 437 RFP 445
           +FP
Sbjct: 167 KFP 169


>01_06_0048 + 25951544-25952074
          Length = 176

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 130 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 38
           RKY   D +  G G   L+   GG GS SDG
Sbjct: 24  RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54


>05_07_0028 +
           27153663-27153932,27154966-27155175,27156220-27156414,
           27156491-27156840,27157198-27157423,27157524-27157692,
           27158145-27158990,27159647-27159818,27159934-27160052,
           27160117-27160155,27161033-27161157,27161250-27161309,
           27161471-27161542,27161980-27162114
          Length = 995

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 126 NTRNEIWRQLDPERKFSFYTREVWARSPTGA 34
           N   + WRQ+     F  +  E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745


>12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-439842,
            440233-440355,440439-440543,440656-441332,441498-441604,
            441970-442177,442178-442245,444209-444411,444580-444663,
            444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 27   GRKXPSENEPKPPLYKMRIFSP 92
            G+    ENE +PP YK R F P
Sbjct: 947  GKSDAPENEMRPPRYKNRSFPP 968


>11_01_0129 -
           1073002-1073073,1073463-1073585,1073667-1073732,
           1074227-1074347,1074536-1074603,1074792-1074863,
           1076045-1076222,1077554-1077888
          Length = 344

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = -2

Query: 230 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 123
           PD++I+ +DGAF       D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203


>11_01_0052 -
           396822-396965,397332-397541,397686-397815,397956-398126,
           398723-398827,398940-399613,399659-399688,399756-399932
          Length = 546

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 27  GRKXPSENEPKPPLYKMRIFSP 92
           G+    ENE +PP YK R F P
Sbjct: 524 GKSDAPENEMRPPRYKNRSFPP 545


>08_01_0669 -
           5767689-5767791,5768512-5768630,5769084-5769271,
           5769624-5769718,5769936-5770093
          Length = 220

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 224 YLATL*VSFRLHNMYR--EYRDLSVGXAVTQCYRDM 325
           Y   + V+F LH  Y    ++DLS+G     CYR +
Sbjct: 185 YCRCIDVTFNLHAEYHIMTHKDLSLGAVYNYCYRGL 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,837,795
Number of Sequences: 37544
Number of extensions: 250194
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)