Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0993
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    95   4e-20
AF067608-10|AAC17650.1|  261|Caenorhabditis elegans Hypothetical...    30   1.3  
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 94.7 bits (225), Expect = 4e-20
 Identities = 38/84 (45%), Positives = 57/84 (67%)
 Frame = +3

Query: 6   LREYXVIGRKXPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 185
           L EY V+GRK P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GEI+    
Sbjct: 10  LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69

Query: 186 XXXXXXXXXXNFGIWLRYESRSGY 257
                     N+G+WL+Y+SR+G+
Sbjct: 70  VFEKNPGTVKNYGVWLKYDSRTGH 93



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/74 (50%), Positives = 44/74 (59%)
 Frame = +2

Query: 257 HNMYREYRDLSVGXAVTQCYRDMXXXXXXXXXSIQIIKVEVIXAAXCXRPQVKQFHNSTI 436
           HNMYREYRD +V  AVTQCYRDM          I I+KV+ + A    R  +K FH++ I
Sbjct: 94  HNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKI 153

Query: 437 RFPXPKRVHHYKRL 478
           RFP P RV   K L
Sbjct: 154 RFPLPHRVTKRKNL 167


>AF067608-10|AAC17650.1|  261|Caenorhabditis elegans Hypothetical
           protein B0511.3 protein.
          Length = 261

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 353 SIQIIKVEVIXAAXCXRPQVKQFHN--STIRFPXPKRVHHYKRLXNLRVQEAXHYFFVIV 526
           S Q  K+E +    C +P  +      ++ ++   K +  ++ L N+R+++  H+  V V
Sbjct: 120 SFQAGKLENLDLYYCGKPTAEDMETIVNSDQWKNAKNISGFRGLSNIRIKDLLHFSLVCV 179

Query: 527 MYVT 538
            Y T
Sbjct: 180 DYAT 183


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 108 WRQLDPERKFSFY--TREVWARSPTGAYGR 25
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 108 WRQLDPERKFSFY--TREVWARSPTGAYGR 25
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,692
Number of Sequences: 27780
Number of extensions: 217552
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)