Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0992
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   4.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.5  

>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 278 LTLFRLIDLKSDFMVMSFSCTYHGSNAFVL*FFVRVS 388
           + LF L  +   F+ +S S   HG NA++L  ++ +S
Sbjct: 54  IRLFSLNVINFSFLSLSVSFITHGDNAYLLPAWIAIS 90


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 390 IETLTKNYKTNALDP*YVHEKDITIKSLFKSMSLNNV 280
           I ++TKN +T  L+   +HEK ++ K     +SL  +
Sbjct: 760 IHSITKNQRTRLLNLLIIHEKLLSDKDNSAHISLRKI 796


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 102  ICIRIISVINKAFAQTRVYK 161
            +CIR +  I+ A A TRVY+
Sbjct: 1074 VCIRNLKSISLAIAMTRVYE 1093


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,169
Number of Sequences: 5004
Number of extensions: 42376
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)