Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0989
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    88   1e-18
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    84   2e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    80   4e-16
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    29   0.86 
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    29   1.1  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    28   2.0  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 45/82 (54%), Positives = 58/82 (70%)
 Frame = +2

Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
           GIP  K  REL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI+TVG  FK
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK 203

Query: 665 YAS*FXCGPFKFEQSHLVVWRQ 730
            A+ F   PFK   S L  WR+
Sbjct: 204 QAANF-LWPFKL-SSPLGGWRE 223



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +3

Query: 369 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K+V
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTV 151



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +1

Query: 256 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 396
           R++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 67  REQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 104 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 247
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 43/81 (53%), Positives = 57/81 (70%)
 Frame = +2

Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
           GIP LK  REL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLIHEI+TVG  FK
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK 204

Query: 665 YAS*FXCGPFKFEQSHLVVWR 727
            A+ F   PF+   S L  WR
Sbjct: 205 QAANF-IWPFQL-SSPLGGWR 223



 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +3

Query: 369 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK+V
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTV 152



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 28/47 (59%), Positives = 33/47 (70%)
 Frame = +1

Query: 256 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 396
           R++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 68  REQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 83  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 247
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYR 64


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 33/65 (50%), Positives = 49/65 (75%)
 Frame = +2

Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
           GIP L   REL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG  FK
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFK 202

Query: 665 YAS*F 679
             + F
Sbjct: 203 EVTKF 207



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = +3

Query: 369 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SV
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSV 150



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = +1

Query: 256 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 396
           R+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 66  RERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 104 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKD 256
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR ++
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRE 65


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 667 VLELFSNSEDLMDEVLNTDNVVFMEXLLNNAVGSDWYTLSTQLGESTFVY*LTTLFKLG 491
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y    +  LG
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALG 375


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 488 IPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNII 613
           +P+LK  REL+ K+   +     +   SN I+EK L  ++II
Sbjct: 422 LPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 826 FKXIPPGRXXVESWSSRLPKXSPRSDIKERVFLAPNHQVGLFKFEGP 686
           +K  PP +    + + +LP   P+    E  F   +H V L+K + P
Sbjct: 672 WKLFPPNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKP 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,425
Number of Sequences: 5004
Number of extensions: 64126
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)