Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0989
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 91 1e-18
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 85 7e-17
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 75 7e-14
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 0.91
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691 29 3.7
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 29 3.7
06_03_0452 + 20931484-20933872,20933950-20934074 29 4.9
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 28 8.5
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 91.1 bits (216), Expect = 1e-18
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = +2
Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
G P LK REL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFK 199
Query: 665 YAS*FXCGPFKFE 703
A+ F PFK +
Sbjct: 200 EANNF-LWPFKLK 211
Score = 78.2 bits (184), Expect = 8e-15
Identities = 34/47 (72%), Positives = 42/47 (89%)
Frame = +3
Query: 369 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSV
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSV 147
Score = 52.4 bits (120), Expect = 5e-07
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +1
Query: 250 QGRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 396
Q ++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K L
Sbjct: 61 QEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109
Score = 36.3 bits (80), Expect = 0.032
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 89 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 244
K VPESVLK + L + A++ ++ IF RA+QY +EY
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEY 58
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 85.0 bits (201), Expect = 7e-17
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 6/79 (7%)
Frame = +2
Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVE------KXLHKHNIICVEDLIHEIFT 646
G P LK REL+YKRG+ KL+ QRIP+T+N ++E + L KH+IIC+EDL+HEI T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMT 198
Query: 647 VGEKFKYAS*FXCGPFKFE 703
VG FK A+ F PFK +
Sbjct: 199 VGPHFKEANNF-LWPFKLK 216
Score = 78.2 bits (184), Expect = 8e-15
Identities = 34/47 (72%), Positives = 42/47 (89%)
Frame = +3
Query: 369 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSV
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSV 146
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +1
Query: 250 QGRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 396
Q ++ ++L R+AR +G +YV E KL FV+RIRGIN + PK+ K L
Sbjct: 60 QEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 101 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKD 256
VPESVL+ + + + +I+ ++ IF RA+QY +EY ++
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQE 61
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 74.9 bits (176), Expect = 7e-14
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
G P LK ++L+YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+
Sbjct: 142 GFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFR 201
Query: 665 YAS*FXCGPFKFEQSHLVVWRQEDPF 742
AS F PFK + + ++ PF
Sbjct: 202 EASNFLM-PFKLKCPERRLQMKKKPF 226
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = +3
Query: 372 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 509
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 167 TLKRRSSAIKKKREIFKRAEQYVKEYRIKDVMKSD 271
TL+ R+ IK KRE+F+R KE+RI+++++ D
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQELLQVD 180
>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
Length = 280
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 579 MLLEVIGIRCPLSLANPRLYTNSRHSLSWGIPKQCKARRYVA 454
MLL IG++CP+S N H +WG + RR ++
Sbjct: 194 MLLAPIGVQCPVSSLGLAGDANVLHFGAWGCTADSRIRRVIS 235
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = -2
Query: 724 PNHQVGLFKFEGPTG----KLTRVL--ELFSNSEDL----MDEVLNTDNVVFMEXLLNNA 575
PN G F F GPTG +L + L +LF N++ L M E +N +V L+ +A
Sbjct: 373 PNQPSGSFLFLGPTGVSKTELAKALAEQLFGNAKLLVRIDMSEYVNASSVT---RLIGSA 429
Query: 574 VGSDWYTLSTQLGE 533
G++ Y QL E
Sbjct: 430 PGTNGYDKGGQLTE 443
>06_03_0452 + 20931484-20933872,20933950-20934074
Length = 837
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = -2
Query: 784 SSRLPKXSPRSDIKERVFLAPNHQVGLFKFE-GPTGKLTRVLELFSNS-EDLMDEVLNTD 611
S ++P+ + + ER+FL+ NH G KLT V +LF NS E ++ + L
Sbjct: 309 SGQIPEDIGQLEELERLFLSNNHFTGSIPDSVALLPKLTNV-QLFQNSFEGILPQELGKH 367
Query: 610 NVVF-MEXLLNNAVGS 566
+++F +E NN G+
Sbjct: 368 SLLFNLETHYNNFSGT 383
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 711 WDCSNLKGPQXN*LAYLNFSPTVKISWMRSSTQIMLCLWSXFSTMLLEV 565
W C +GP +AY +SP + S Q+ L +WS +T + V
Sbjct: 82 WTCKIDEGPAG--IAYARWSPDSRHILTTSEFQLRLTVWSLVNTACIHV 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,128
Number of Sequences: 37544
Number of extensions: 426240
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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