Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0989
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    83   2e-16
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   1.1  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   4.3  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   4.3  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 41/71 (57%), Positives = 50/71 (70%)
 Frame = +2

Query: 485 GIPQLKECRELVYKRGFAKLSGQRIPITSNSIVEKXLHKHNIICVEDLIHEIFTVGEKFK 664
           G P  K   +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL HEI TVG  FK
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFK 198

Query: 665 YAS*FXCGPFK 697
            A+ F   PFK
Sbjct: 199 EATNF-LWPFK 208



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 52/138 (37%), Positives = 66/138 (47%)
 Frame = +3

Query: 375 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVVS*YTNVDSPS*VDN 554
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++              N
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161

Query: 555 VYQSLPTALLRRXSINTTLSVLRXXXXXXXXXXXXXXXXVNXPVGPSNLNNPTWWFGAKK 734
                   ++ +      +  L                  N  + P  LNNPT  +  KK
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNF-LWPFKLNNPTGGW-TKK 219

Query: 735 TLSLMSDRGEXLGNREDQ 788
           T   +   G   GNREDQ
Sbjct: 220 TNHFV--EGGDFGNREDQ 235



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +1

Query: 256 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 381
           ++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 62  KEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +2

Query: 83  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 247
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYR 58


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 491 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 363
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 303  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 437
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 303  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 437
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 303  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 437
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,806,696
Number of Sequences: 27780
Number of extensions: 362460
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)