Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0988
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    28   1.1  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.4  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   4.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.7  

>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 257 DYGNIICKVDVEFSNGEENMTISQVTNGISEIVQ-QYSGTEVLNGSDVKIQFRARKDDML 433
           +YG  I  V+  F     N+      +GI+  +  +Y GT + NG+          D+  
Sbjct: 272 NYGEDISNVNTTFFEASPNV-FGTFDHGINSFIPTEYLGTTLNNGASSNGSCVINYDNFG 330

Query: 434 HLYSSFSSFIGEIPLNLNINNAKYMHLVE 520
            +  + S++  +I  N N ++ K   +++
Sbjct: 331 FMMGASSTYFNKIMRNFNDSSTKNGRIIQ 359


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 458 KMKNLNINATYHLFLLETVFSHHC 387
           K K + I   + LF++   FSHHC
Sbjct: 2   KRKIIAIGIFFRLFIIHIHFSHHC 25


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 486 FKFNGISPIKDEKL---EYKCNISSFLARNCIFTSLPFKTSVPEYCCTISLIPLV 331
           ++ + +S IK++ L   +  CNI + LA N I  S+P  +S   Y C  +L  L+
Sbjct: 561 YQISTVSGIKNDPLFTLDQTCNIIAKLADNLIHPSVPIGSSA--YRCRRNLADLL 613


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +2

Query: 245  NPSTDYGN--IICKVDVEFSNGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQFRAR 418
            N S  Y    ++ K+D E S  +   T S   + +  +V    G  V +      QF+  
Sbjct: 1181 NESAQYEGRAVMLKID-ETSGSKSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKE 1239

Query: 419  KDDMLHLYSSFSSFIGEIPLNLN 487
              D+++  ++++      P N N
Sbjct: 1240 GLDLIYYVNNYNERTSRYPFNPN 1262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,845
Number of Sequences: 5004
Number of extensions: 63065
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)