Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0988
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    34   0.12 
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580...    33   0.16 
12_02_0921 - 24352178-24352324,24352840-24352890,24354188-243542...    30   1.5  
08_01_0801 - 7750548-7751708                                           30   1.5  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    30   2.0  
01_01_0428 + 3250204-3251724                                           29   4.5  
01_06_0930 + 33134385-33138257                                         28   7.9  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 248  PSTDYG-NIICKVDVEFSNGEENMTISQVTNG--ISEIVQQYSGTEVLNGSDVKIQFRAR 418
            PS+ YG +I+   DV  S  +++ +   +TNG   S  V++     +LN   + I   A 
Sbjct: 911  PSSSYGQSILNSHDVSLSLPQKDSSCIAITNGPSSSNYVEEVPMETILNQPTLSIPLEAC 970

Query: 419  KDDMLH 436
            KD++LH
Sbjct: 971  KDELLH 976


>03_02_0132 -
           5808606-5808696,5808804-5808875,5809133-5809204,
           5809299-5809379,5809475-5809618,5809708-5809779,
           5810027-5810140,5810684-5810755,5811462-5811609,
           5812120-5812231
          Length = 325

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 428 MLHLYSSFSSFIGEIPLNL-NINNAKYMHLVE 520
           + HLY SF++F GEIP+ L N+   +Y++L E
Sbjct: 170 LTHLYLSFNNFKGEIPVELANLPELRYLYLHE 201


>12_02_0921 -
           24352178-24352324,24352840-24352890,24354188-24354253,
           24354771-24354875
          Length = 122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 381 KTSVPEYCCTISLIPLVT*LIVIFSSPLENSTSTLQMIFP*SVLGFLLSKKLSPF 217
           KT  PE+CC I L  +   L V +S  + +S++  +++   + +  L  ++LSP+
Sbjct: 38  KTGNPEHCCVIKLYKIGR-LQVYYSIFIHSSSTKRKIMLREAAIDMLRPRRLSPY 91


>08_01_0801 - 7750548-7751708
          Length = 386

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 17  LKQNCLCKIENVKRVLAVYRRKSRHQYSRL--CCTEF-TCHHRQEHVFATKG 163
           L Q  LCK  NV  V        +HQ  +L   C EF +C  + + V A+KG
Sbjct: 297 LCQGILCKNLNVHNVATTLALADQHQCDKLKDACIEFMSCSKKMKGVVASKG 348


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = -1

Query: 245 SSYQRNCHHFWVILYQSLYSKAVSSTESLW*QKHV 141
           +S +R   HF +++Y++L++ AV +  +LW ++ V
Sbjct: 32  ASLKRGMSHFVLVVYRNLFATAVMAPFALWFERRV 66


>01_01_0428 + 3250204-3251724
          Length = 506

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 416 RKDDMLHLYSSFSSFIGEIPLNL 484
           R  DM+HL  S S+F G+IP+ L
Sbjct: 127 RLTDMIHLNFSHSNFYGQIPIGL 149


>01_06_0930 + 33134385-33138257
          Length = 1290

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 432 NISSF-LARNCIFTSLPFKTSVPEYCCTISL 343
           N+ SF LA  C+  SLP  T +  +C T++L
Sbjct: 805 NLESFTLANCCVIGSLPPNTEIFRHCMTLTL 835


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,446
Number of Sequences: 37544
Number of extensions: 342633
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)