Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0988
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 29 3.1
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 29 3.1
AL031627-16|CAA20968.1| 262|Caenorhabditis elegans Hypothetical... 29 3.1
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 29 3.1
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 29 3.1
Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical... 28 7.1
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 680 DGVLTLQLMVYKYIW-----HTHFTIISLWELTANKKCICKHSNFQTNSNFNSVI 531
DGV+ L + KYI + +FT S + +CI + F NSNF S+I
Sbjct: 495 DGVIVLDTELIKYIIVLTLANLYFTTRSSFCTERLSRCIQREKRFPINSNFASLI 549
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 680 DGVLTLQLMVYKYIW-----HTHFTIISLWELTANKKCICKHSNFQTNSNFNSVI 531
DGV+ L + KYI + +FT S + +CI + F NSNF S+I
Sbjct: 495 DGVIVLDTELIKYIIVLTLANLYFTTRSSFCTERLSRCIQREKRFPINSNFASLI 549
>AL031627-16|CAA20968.1| 262|Caenorhabditis elegans Hypothetical
protein Y102A5C.27 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 477 NGISPIKDEKLEYKCNISSFLARNCIFTSLPFKTSVPEYC 358
N I+PI D E+ + + C+ T++ K + PE C
Sbjct: 163 NAITPISDSVYEFNSIVQPADSEGCVKTTITCKKASPEAC 202
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 680 DGVLTLQLMVYKYIW-----HTHFTIISLWELTANKKCICKHSNFQTNSNFNSVI 531
DGV+ L + KYI + +FT S + +CI + F NSNF S+I
Sbjct: 495 DGVIVLDTELIKYIIVLTLANLYFTTRSSFCTERLSRCIQREKRFPINSNFASLI 549
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 680 DGVLTLQLMVYKYIW-----HTHFTIISLWELTANKKCICKHSNFQTNSNFNSVI 531
DGV+ L + KYI + +FT S + +CI + F NSNF S+I
Sbjct: 495 DGVIVLDTELIKYIIVLTLANLYFTTRSSFCTERLSRCIQREKRFPINSNFASLI 549
>Z70035-4|CAA93864.2| 410|Caenorhabditis elegans Hypothetical
protein R09D1.4 protein.
Length = 410
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 349 FANSISYLTNCHIFFT--IRKFHINFTDDISIISAWIPPIKEIVTI 218
F++ +S +T C +F I H N D + I W+P KE V +
Sbjct: 170 FSSVLSDITMCKLFIESIIAFIHTNSIDGMDIHWKWVPETKEDVYV 215
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 299 NGEENMTISQVTNGISEIVQQYSGTEVLNGSDVKIQ 406
NGE+ TI+Q T G S+I + + +LNG+DVKI+
Sbjct: 44 NGEDVKTIAQ-TVGTSQIDELH----ILNGTDVKIE 74
>Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical
protein F47A4.3b protein.
Length = 742
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 102 DSVALNLPVITDKNMFLLPKALSGGDSFTIQGL 200
D + NL ++ N+F P L+G D+ + GL
Sbjct: 406 DMTSKNLAIVWSPNLFRPPPTLNGADTHLLSGL 438
>Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical
protein F47A4.3a protein.
Length = 759
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 102 DSVALNLPVITDKNMFLLPKALSGGDSFTIQGL 200
D + NL ++ N+F P L+G D+ + GL
Sbjct: 423 DMTSKNLAIVWSPNLFRPPPTLNGADTHLLSGL 455
>AL132862-21|CAB70232.1| 476|Caenorhabditis elegans Hypothetical
protein Y73F8A.26 protein.
Length = 476
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 458 KMKNLNINATYHLFLLETVFSHHCHLKLQFQSTVAQ 351
K+ +N + HLF + H CH K+Q + AQ
Sbjct: 260 KLARINGHYVGHLFAAHFEYLHFCHFKMQRGAEAAQ 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,910
Number of Sequences: 27780
Number of extensions: 357116
Number of successful extensions: 1064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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