Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0988
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.2  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 575 KHSNFQTNSNFNSVIFFKS 519
           K+SN+   +N+N  +++K+
Sbjct: 90  KYSNYNNYNNYNKKLYYKN 108


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 416 RKDDMLHLYSSFSSFIGEIPLNLNINNAKYMHLVEI*KKSQ 538
           R D + HL+ S +  + E PL  N+N + +  L     K Q
Sbjct: 228 RIDAVPHLFESANISLDEPPLGKNLNLSLHASLNHTLTKDQ 268


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 374 EVLNGSDVKIQFRARKDDMLHLYSSFSS 457
           E+ +G+       +++ D+LHL+ S+S+
Sbjct: 649 ELTHGTLAASTLYSKRPDLLHLFGSWSN 676


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 374 EVLNGSDVKIQFRARKDDMLHLYSSFSS 457
           E+ +G+       +++ D+LHL+ S+S+
Sbjct: 649 ELTHGTLAASTLYSKRPDLLHLFGSWSN 676


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 374 EVLNGSDVKIQFRARKDDMLHLYSSFSS 457
           E+ +G+       +++ D+LHL+ S+S+
Sbjct: 649 ELTHGTLAASTLYSKRPDLLHLFGSWSN 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,448
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)