Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0987
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   1.9  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   3.4  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   4.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   4.5  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    25   4.5  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    25   4.5  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.5  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   5.9  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    24   7.8  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 78  SSGQHTVFVLNHFESHNKSSLLNFLESIPFSQRLN 182
           + G H  F     E+H+ S++L F++ + F++ LN
Sbjct: 506 TEGGHAWFWSVSNEAHDGSAVLRFIDRVNFTKNLN 540


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -1

Query: 295 VPVILKSF*LKTPCFKNRIPFIYFKKDSRSCHEVLSKLFSR*ENGIDSRKFKSDD 131
           +P++ K    KTP  ++        KD  S    +   +S  + G+ S K  SD+
Sbjct: 221 MPIVKKPLRQKTPVSRSSDTTTELSKDLISSSSSIHSTYSSAQTGLTSAKVSSDE 275


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 205 CHEVLSKLFSR*ENGIDSRKFKSDDLL 125
           C E L  L    ENGI  R  KSD++L
Sbjct: 486 CKETLEGLQHLHENGIVHRDIKSDNIL 512


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 200 VTRPRIFFKINKWYSIFKTRSF 265
           V+ P +FF +N WYS+ K  SF
Sbjct: 626 VSCPIMFFYLNNWYSV-KPSSF 646


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 4   TYTLKLSKPAINCGFGWGFITKCRNHPVNTLFLC*TTSKVI 126
           TY   LSKP I+ G G  + T      +N      TT K I
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDI 461


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 27  TSDKLWFWMGLYHQMQKSSGQHTVFVLNHFESHNKSSLLNFLESI 161
           ++ K+ FW+ L +   + +       ++ F S +K+++ NFLE +
Sbjct: 131 STSKIVFWLWLLNPRTQGAAFIYASYISPFLSDHKAAINNFLEKL 175


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 284 YDRNSGNIPFTILLVQPSNKXKNKVYQTNXNIYYKSDRNS 403
           YDR   ++    LL+ P N+ KN+  + N   Y  ++ N+
Sbjct: 687 YDRYRVSLESARLLLGPLNELKNESNKINEEYYLMNELNT 726


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 149 SRVNSIFSTTKQL*QNLVTRPR-IFFKINKWYSIFKTRSFQL 271
           +R N+IFS  +   +    RPR IF KI ++++I   RSF L
Sbjct: 103 NRKNNIFSFDELELEERSNRPRSIFGKIKQFFNIL-LRSFNL 143


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 RPRIFFKINKWYSIFKTRSFQLKR 277
           + R+      WY + K +SFQ KR
Sbjct: 475 KDRLIVTFRFWYYLMKAKSFQHKR 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,213
Number of Sequences: 5004
Number of extensions: 30246
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)