Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0986
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    26   4.6  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   6.1  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 212 WYDSKNSKSRIDYYEVWSRLTSSRQRSTHPTV 307
           W D  N  + I+  E+ S LT  +   THP +
Sbjct: 87  WLDHDNPYNDINIAEIMSPLTKPQDLLTHPAI 118


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 560 RIPFQSLLVFNPHRVFVCLSP 498
           ++P +S L+ NP  V++CL P
Sbjct: 265 KLPKRSYLIDNPKNVYLCLVP 285


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +1

Query: 301 YGTSIKIAPVTTETEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKW 480
           Y +SI++ P  T+T +N+E    ++ + +     + V+P + D  Y  T T+   D AK 
Sbjct: 817 YSSSIELTPQITKTSLNREK-PALHGSINLKHSTRPVVP-IADGIYAST-TLHPIDNAKN 873

Query: 481 QMV 489
           ++V
Sbjct: 874 RLV 876


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 614 GAQERIETFHLISDRYGHRIPFQSLL 537
           GA   I TFH++ D    RIP   ++
Sbjct: 65  GATSAISTFHILKDEIIRRIPLLPII 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,782
Number of Sequences: 5004
Number of extensions: 60903
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)