Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0983
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   4.7  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    24   8.1  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    24   8.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    24   8.1  

>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 82  PDWSSSMTLLLLKGVHHLYSLHLLCR 5
           P    S  ++LL+G+HH++S  +L R
Sbjct: 107 PAHIKSWMVMLLRGLHHIHSRFILHR 132


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 CLNQFI--KQDLTYRQYIPRSTFAVYXITFFLKTNF 231
           C+ +++   + + YRQ+     ++VY I  FL+TNF
Sbjct: 148 CIEEYVFSSECIKYRQF-----YSVYEIIDFLRTNF 178


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 CLNQFI--KQDLTYRQYIPRSTFAVYXITFFLKTNF 231
           C+ +++   + + YRQ+     ++VY I  FL+TNF
Sbjct: 148 CIEEYVFSSECIKYRQF-----YSVYEIIDFLRTNF 178


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 CLNQFI--KQDLTYRQYIPRSTFAVYXITFFLKTNF 231
           C+ +++   + + YRQ+     ++VY I  FL+TNF
Sbjct: 120 CIEEYVFSSECIKYRQF-----YSVYEIIDFLRTNF 150


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 332 CLNQFI--KQDLTYRQYIPRSTFAVYXITFFLKTNF 231
           C+ +++   + + YRQ+     ++VY I  FL+TNF
Sbjct: 148 CIEEYVFSSECIKYRQF-----YSVYEIIDFLRTNF 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,232
Number of Sequences: 5004
Number of extensions: 24682
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)