Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0983
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical ...    27   7.1  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    27   7.1  

>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 188 VIGVNCNQSFSNSVLNWFTRSACDVTRTFSQFPQS 84
           +I    NQ+ +   +NW T+S C V      +P+S
Sbjct: 305 IISSCVNQTLNTCDINWSTKSVCGVVLASGNYPKS 339


>Z54270-9|CAO82016.1|  787|Caenorhabditis elegans Hypothetical
           protein F11C1.5c protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 100 ENVLVTSQADLVNQFKTEFE 159
           + VL  S+ DL+N FKT+FE
Sbjct: 315 KEVLSDSEKDLINTFKTKFE 334


>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
           protein F11C1.5b protein.
          Length = 1339

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 100 ENVLVTSQADLVNQFKTEFE 159
           + VL  S+ DL+N FKT+FE
Sbjct: 315 KEVLSDSEKDLINTFKTKFE 334


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
           protein F11C1.5a protein.
          Length = 1804

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 100 ENVLVTSQADLVNQFKTEFE 159
           + VL  S+ DL+N FKT+FE
Sbjct: 315 KEVLSDSEKDLINTFKTKFE 334


>AL032628-1|CAA21555.1|  218|Caenorhabditis elegans Hypothetical
           protein Y38H6A.1 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 359 VSKVYTKHLCLNQFIKQDLTYRQYIPRSTFAVYXIT 252
           ++K Y   +C  +F+KQ+L+ +QY     +A   +T
Sbjct: 149 ITKAYVNKIC-TKFVKQNLSAKQYACAIKYAPQVVT 183


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 52  IAGSLNWTNQALCGNWENVL-VTSQADLVNQFKTEFEKLWLQFTPIT 189
           I  S++W +   C  W N L + SQ   +      F  +++ F P +
Sbjct: 228 IISSISWLSPNFCSIWSNFLPIFSQLPRIFSIFHRFPPIFMDFMPFS 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,826
Number of Sequences: 27780
Number of extensions: 129870
Number of successful extensions: 283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)