Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0982
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545...    29   1.7  
07_03_0001 + 12219741-12219927,12219976-12220955                       29   1.7  
06_03_0141 - 17192151-17192166,17192305-17192630                       29   1.7  
09_01_0157 + 2317965-2318321                                           29   2.3  
02_02_0726 - 13374061-13374151,13374576-13374787,13374990-133750...    29   3.0  
06_03_0286 + 19165824-19165977,19166414-19166458,19166772-191668...    28   4.0  
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    27   7.0  
02_05_0231 + 27037091-27039466                                         27   7.0  

>12_02_0715 - 22453747-22453935,22454347-22454457,22454514-22454572,
            22454893-22455067,22455255-22455307,22455670-22455739,
            22457044-22457218,22457639-22457703,22458196-22460826
          Length = 1175

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 371  SNQEYVGTKTARCWETVRTRGTLLPPR 451
            +++EYVG    RCW T R     L PR
Sbjct: 977  NSREYVGCHAIRCWATWRKETRTLSPR 1003


>07_03_0001 + 12219741-12219927,12219976-12220955
          Length = 388

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 350 ATWTSLMSNQEYVGTKTARCWETVRTRGTLL 442
           AT   +M  QE +  K+++CW  +R   TLL
Sbjct: 262 ATIAHIMDEQEDIKIKSSKCWNPIRPPTTLL 292


>06_03_0141 - 17192151-17192166,17192305-17192630
          Length = 113

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 350 ATWTSLMSNQEYVGTKTARCWETVRTRGTLL 442
           AT   +M  QE +  K+++CW  +R   TLL
Sbjct: 6   ATIAHIMDEQEDIKIKSSKCWNPIRPPTTLL 36


>09_01_0157 + 2317965-2318321
          Length = 118

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 350 ATWTSLMSNQEYVGTKTARCWETVRTRGTLL 442
           AT   +M  QE +  K+++CW  +R   TLL
Sbjct: 6   ATIAHVMDEQEDIKIKSSKCWNPIRPPTTLL 36


>02_02_0726 -
           13374061-13374151,13374576-13374787,13374990-13375002,
           13375318-13375655
          Length = 217

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 353 TWTSLMSNQEYVGTKTARCWETVRTRGTLL--PPRVQMHANFSIQINEIRESDTRPI 517
           T T++ +   ++  K   CW  +R   TLL  PP       FS    ++   D +P+
Sbjct: 145 TMTTIDTTVAHIKIKLTNCWNLIRPTATLLKRPPNQYTSFVFSPNKVDLHRQDQQPM 201


>06_03_0286 +
           19165824-19165977,19166414-19166458,19166772-19166817,
           19167155-19167314
          Length = 134

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 365 LMSNQEYVGTKTARCWETVRTRGTLL 442
           +M  QE +  K+++CW  +R   TLL
Sbjct: 11  IMDEQEDIKIKSSKCWNPIRQPATLL 36


>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 327 GRNCVAALLLGRV*CQTKSTLVQRRHAAGRQ*GPGARSYLLECKCTPTSA 476
           G N V  L + R   +T S L   +   G     G   YL++CKC   +A
Sbjct: 430 GDNVVLLLQVARFLMKTVSQLASGKQPVGTTAYMGNIQYLMQCKCGVNTA 479


>02_05_0231 + 27037091-27039466
          Length = 791

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 343 LPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQ 474
           L  Y+  +        YK GT+ GD K P  AP SS   +RQ Q
Sbjct: 473 LKAYMKSTKSPTAALIYK-GTVFGDRKTPEVAPFSSRGPSRQNQ 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,043
Number of Sequences: 37544
Number of extensions: 245960
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)