Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0982
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 42 2e-04
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 42 2e-04
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 42 2e-04
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 42 2e-04
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 31 0.67
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 31 0.67
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 31 0.67
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 31 0.67
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 31 0.67
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 31 0.67
AL032646-9|CAA21684.1| 305|Caenorhabditis elegans Hypothetical ... 30 0.88
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 29 1.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 3.6
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 3.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 4.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 4.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 4.7
AL031624-2|CAA20942.1| 244|Caenorhabditis elegans Hypothetical ... 27 6.2
AF016446-6|AAC24162.1| 322|Caenorhabditis elegans Serpentine re... 27 8.2
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 268 HLLQCERQFKSVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLL 411
HL + F PV + + T+ LPC ESD K + WYKDG ++
Sbjct: 105 HLAYMRKHFLKSPVAQRVQEGTTLQLPCQAPESDPKAELTWYKDGVVV 152
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 268 HLLQCERQFKSVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLL 411
HL + F PV + + T+ LPC ESD K + WYKDG ++
Sbjct: 133 HLAYMRKHFLKSPVAQRVQEGTTLQLPCQAPESDPKAELTWYKDGVVV 180
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 268 HLLQCERQFKSVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLL 411
HL + F PV + + T+ LPC ESD K + WYKDG ++
Sbjct: 105 HLAYMRKHFLKSPVAQRVQEGTTLQLPCQAPESDPKAELTWYKDGVVV 152
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 268 HLLQCERQFKSVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLL 411
HL + F PV + + T+ LPC ESD K + WYKDG ++
Sbjct: 105 HLAYMRKHFLKSPVAQRVQEGTTLQLPCQAPESDPKAELTWYKDGVVV 152
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 4033 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 4086
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5710 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5744
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 3393 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 3446
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5070 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5104
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 4033 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 4086
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5710 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5744
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 4033 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 4086
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5710 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5744
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 3393 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 3446
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5070 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5104
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.7 bits (66), Expect = 0.67
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANARQLQHTDQRNQG 498
ET C + S KP V+W+KDGT L + K T ++ + +QG
Sbjct: 4033 ETAKFECKV--SGTKPDVKWFKDGTPLKEDKRVHFESTDDGTQRLVIEDSKTDDQG 4086
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 313 VKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDS 420
V++ + + + L C +D S + P + WYKDG ++ S
Sbjct: 5710 VRTTEGQPLKLECKVDASPL-PEMVWYKDGAIVTPS 5744
>AL032646-9|CAA21684.1| 305|Caenorhabditis elegans Hypothetical
protein Y54E2A.10 protein.
Length = 305
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -1
Query: 314 TVTGTLLNCLSHCSKCVHISLNSIYLVTTF*AALKLHGFLYSLVIKAKLFAANAAVKLKT 135
T +L N +SH S+ +H+ L+ + AL G + S+V+ A ++ AN +
Sbjct: 189 TTLTSLENAMSHASRLIHVDLSPAHAAIPR-WALAFGGIMLSVVV-AAMYVANCISEKMG 246
Query: 134 IARNMNLIDXEGH 96
R +L+ G+
Sbjct: 247 QRRQKSLVPKRGN 259
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 338 TVSSL*LFTVTGTLLNCLSHCSKCVHISLNSIYLVTTF 225
T+++L +F V +L C + +KC +S N++YL F
Sbjct: 495 TIATLIIFAVFCSLGLCCIYKNKCCKVSRNAVYLTRKF 532
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +1
Query: 298 SVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANAR 465
SVP V+ Y DET P D +D V + ++ H+PT S R
Sbjct: 215 SVPDDVRHYADETTPPPVLHDVADRYSTVAYMNHEPTHNSTRVYSHSPTRSQVGVR 270
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +1
Query: 298 SVPVTVKSYKDETVLLPCYLDESDVKPRVRWYKDGTLLGDSKDPGHAPTSSSANAR 465
SVP V+ Y DET P D +D V + ++ H+PT S R
Sbjct: 437 SVPDDVRHYADETTPPPVLHDVADRYSTVAYMNHEPTHNSTRVYSHSPTRSQVGVR 492
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 334 TVLLPCYLDESDVKPRVRWYKDG 402
T + C L+E ++K +RW +DG
Sbjct: 3121 TATIACELEECELKRSIRWLRDG 3143
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 334 TVLLPCYLDESDVKPRVRWYKDG 402
T + C L+E ++K +RW +DG
Sbjct: 3121 TATIACELEECELKRSIRWLRDG 3143
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 334 TVLLPCYLDESDVKPRVRWYKDG 402
T + C L+E ++K +RW +DG
Sbjct: 3121 TATIACELEECELKRSIRWLRDG 3143
>AL031624-2|CAA20942.1| 244|Caenorhabditis elegans Hypothetical
protein H16D19.3 protein.
Length = 244
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 171 VICCKCCSQT*DNSSKYEPNRSXRSHKITXPV 76
V C CC++T + S+Y + R H PV
Sbjct: 144 VYICNCCNRTWSSRSEYVAHLHGRDHMCPDPV 175
>AF016446-6|AAC24162.1| 322|Caenorhabditis elegans Serpentine
receptor, class h protein20 protein.
Length = 322
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 296 LNCLSHCSKCVHISLNSIYLVTTF*AALKLHGFLYSLVIKAKLFA 162
++CL V ISL+S++L+T AL L ++ IK K+FA
Sbjct: 1 MDCLEPPPIFVRISLHSVHLITFPTYALALFSLIF---IKTKIFA 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,051
Number of Sequences: 27780
Number of extensions: 230221
Number of successful extensions: 849
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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