Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0982
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.27 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   5.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   5.8  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 331 ETVLLPCYLDESDVKPRVRWYKDGTLLGDSK 423
           E   L C +   D+   + W KDG  +G S+
Sbjct: 626 ERTTLTCSVTRGDLPLSISWLKDGRAMGPSE 656


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 97  TQNHXSGKLKRKYHNIQIKKLLRRVY 20
           T NH S K+  +  N+ +K++  +VY
Sbjct: 228 TLNHNSDKMSDQQENLTLKEVDNKVY 253


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 444 LLECKCTPTSAYRSTKSGNR 503
           LLE K  PT AY+     NR
Sbjct: 103 LLEAKYDPTGAYKQHYLQNR 122


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 444 LLECKCTPTSAYRSTKSGNR 503
           LLE K  PT AY+     NR
Sbjct: 103 LLEAKYDPTGAYKQHYLQNR 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,402
Number of Sequences: 438
Number of extensions: 2558
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)