Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0981
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 120 1e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 67 1e-12
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 64 1e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 59 3e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.002
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 0.93
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 2.9
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 6.6
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 120 bits (289), Expect = 1e-28
Identities = 52/58 (89%), Positives = 53/58 (91%)
Frame = +2
Query: 257 DEAQXKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTXAPLQPQ 430
DEAQ KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLT APL P+
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPK 113
Score = 109 bits (263), Expect = 1e-25
Identities = 48/52 (92%), Positives = 51/52 (98%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254
EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYV 54
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 66.9 bits (156), Expect = 1e-12
Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 260 EAQXKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTXAPL 421
EAQ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLT PL
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Score = 61.3 bits (142), Expect = 6e-11
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +V
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFV 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 63.7 bits (148), Expect = 1e-11
Identities = 23/70 (32%), Positives = 46/70 (65%)
Frame = +2
Query: 218 RDGRYGTEGLLCRDEAQXKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 397
+ G + ++ DEA+ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 398 VLLTXAPLQP 427
+LLT P+ P
Sbjct: 103 ILLTEPPMNP 112
Score = 48.0 bits (109), Expect = 6e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 102 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 206
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.8 bits (136), Expect = 3e-10
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = +2
Query: 287 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTXAPLQP 427
+L YPI HG + NWD ME+ W + + LR PE+H LLT PL P
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Score = 42.3 bits (95), Expect = 3e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYV 254
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYM 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 39.1 bits (87), Expect = 3e-04
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 284 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 409
+ +K I +G V NWD +W + +L+ P EHP+L+T
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILIT 104
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 99 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 200
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 30.3 bits (65), Expect = 0.13
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 DEAQXKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTXAPLQPQ 430
DE Q I + +K +GI+ +W+ W +L+V P E+ +++T PQ
Sbjct: 55 DELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQ 114
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTXAPLQP 427
P E +++NWD ME++ +TF +L + EHP+ +T P
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 209
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 0.93
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -1
Query: 331 IPVSDDSVFDGVFEGQDTSFXLCLIST*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 152
+P + +V +TSF L S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 151 PALHIP 134
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 253 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 95
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 235 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 143
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 255 LHKSPSVPYRPSRPDGGAFPRSRGTR 178
+ K+PS PY SRP A S TR
Sbjct: 310 ISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 299 PIEHGIVTNWDDMEKIWHHTF 361
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 114 LVVDNGSGMCKAGFAG 161
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 159 GDDAPRAVFPSIVGRPRHQGVMVGM 233
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 158 CETGLAHTGAIVYYQRXNFFXAHLELVFN 72
C HT +V++Q NF + ELV N
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNN 257
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 281 ILTLKYPIEHGIVTN 325
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 320 TNWDDMEKIWHHTFYNELRVAPEEHP 397
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,195
Number of Sequences: 5004
Number of extensions: 35338
Number of successful extensions: 108
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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