Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0980
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 29 0.43
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 1.3
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 3.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 3.0
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 25 5.3
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 5.3
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.0
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 9.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.3
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.43
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Frame = +3
Query: 144 YFEQKVMC*KHGSDGGGELSCESARASVTGPTTTAAPIQPYSGFLGNGKSVIRPIAFKPL 323
Y ++V G +G G R S G T TA+P+ Y + ++ + K L
Sbjct: 272 YANKRVWGPSLGKNGEGSNESVIMRLSEIGKTETASPLLQYEWYTNETEAEAKARRDKRL 331
Query: 324 GGRLSAGGERYGSTPVLATRPPSHMTLYGSSSDVREGRWCSSPQ-PAFAVRSXTR--HAL 494
G L+ TP+ + P + ++ + W Q P +A+ R +AL
Sbjct: 332 GELLTGKHCSECGTPLYSDPSPEELGIWLHALKYESKDWSYKTQLPKWALDVCCRDPNAL 391
Query: 495 PL 500
P+
Sbjct: 392 PI 393
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 445 LHQRPSRTSDELPYRVICDG-GLVASTGVDPY--RSPPAERRP 326
++ +P S +LP +VI DG G ++ +P+ SPP + P
Sbjct: 201 INDQPFSNSFDLPSQVIADGTGAISDINGNPFPMNSPPLDMEP 243
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 174 HGSDGGGELSCESARASVTGPTTTAAPIQP 263
HG+D GG + +R++ T PT+ A P
Sbjct: 446 HGNDFGGNFNNMQSRSTTTSPTSAVASPAP 475
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 372 LATRPPSHMTLYGSSSDVREGRWCSSPQPAFAVRSXTR 485
+AT P + + V EG W S P PAF V T+
Sbjct: 386 MATDVPLNFQATKAPDFVPEGPWKSHPLPAFIVDKVTK 423
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 61 TNSATTPDFVISVFLASLIVCEAIPVYFILNRK*CVK 171
T S+TTP++++ L+ IV Y NR+ C+K
Sbjct: 325 TLSSTTPEYILLKKLSETIVALGQYNYLDSNRRKCIK 361
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 245 CRPHSTLQRLPRQRQVSYPSDSVQAAGRASL 337
C+P + ++ RQ++V + SD+ Q G+ +
Sbjct: 254 CQPLEEIGKICRQKKVFFHSDAAQGYGKIDI 284
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 357 GSTPVL-ATRPPSHMTLYGSSSDVREGRWCSSPQPAFAVRSXTRHALPLRFIKTTT 521
G P+ TR S+++ ++ GRW S PAF R+ L + + TT
Sbjct: 322 GVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRSPAFGEFDAIRYGLRMSPKEITT 377
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 321 LGGRLSAGGERYGSTPVLATRPPSH 395
L G+ S + YG T LAT PPSH
Sbjct: 1234 LSGKESESKKNYGVTEKLAT-PPSH 1257
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 54 KVNE*CNDT*LCDKCLSCKPNCM 122
K N+ C+D C +C+ K +C+
Sbjct: 297 KDNKKCDDARPCQRCIKAKTDCI 319
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 493 RAWRVXERTAKAGWGELHQRPSRTSDE 413
RAW++ + TAK+ W H P + S++
Sbjct: 788 RAWQIVQSTAKSIW---HSDPPKESEK 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,208
Number of Sequences: 5004
Number of extensions: 37113
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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