Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0980
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0011 + 17139322-17139451,17139552-17140174 29 3.1
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 29 3.1
01_03_0120 + 12717221-12717665,12718539-12718724,12719482-127195... 29 3.1
07_03_0109 + 13502604-13503059,13503729-13504682 28 5.4
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 28 5.4
12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516 27 9.4
12_02_0643 - 21461123-21461902 27 9.4
10_08_0742 + 20244984-20247008 27 9.4
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 27 9.4
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713 27 9.4
05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400... 27 9.4
01_07_0243 + 42240553-42240750,42241114-42241255,42242327-42242442 27 9.4
01_01_0680 + 5217633-5219072 27 9.4
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 400 VICDGGLVASTGVDPYRS--PPAERRPPSGLNAIG 302
VI DG + G DP + PP PP+G N IG
Sbjct: 186 VIGDGKRLTPIGPDPIHNEFPPPPPSPPNGANVIG 220
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = -3
Query: 400 VICDGGLVASTGVDPYRS------PPAERRPPSGLNAIG 302
VI DG + TG DP + PP PP+G N IG
Sbjct: 150 VIGDGKRLTPTGPDPIHNEFQPPPPPPPPSPPNGANVIG 188
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 180 SDGGGELSCESARASVTGPTTTAAPIQPYSGFLGNGKSVIRPIAFK 317
SD G +S ES VT PT +++P GK+++ P +K
Sbjct: 296 SDAGNNMSEESYSEVVTSPTHSSSPSSSCCSDDDCGKTLLEPSTYK 341
>01_03_0120 +
12717221-12717665,12718539-12718724,12719482-12719585,
12720096-12720620
Length = 419
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 177 GSDGGGELSCESARASVTGPTTTAAPIQPYSGFLGNGKSVIRPIAFKPLGGRLSAGG 347
G+ G L+ A A+ G T T+A G G G+S R + F GG
Sbjct: 57 GNGDGASLAAAGAAATTVGGTGTSAAATTGGGGAGGGRSPSRVVIFNFGDSNSDTGG 113
>07_03_0109 + 13502604-13503059,13503729-13504682
Length = 469
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 309 AFKP-LGGRLSAGGERYGSTPVLATRPPSHMTLYGSSSDVREGRWCSSPQPAFAVRSXTR 485
A+KP L GR SAG V+ T PP M + S +E S PA RS T
Sbjct: 220 AYKPILDGRSSAGDGDGDVDDVMLTTPPETMVMKYFSFGPKEISALRSLIPAHLTRSTTA 279
Query: 486 HAL 494
L
Sbjct: 280 FEL 282
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 177 GSDGGGELSCESARASVTGPTTTAA 251
G GGGE S+ +S +GP+T++A
Sbjct: 8 GGGGGGEAGAASSSSSSSGPSTSSA 32
>12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516
Length = 229
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = -3
Query: 514 VFMKRSGRAWRVXERTAKAGWGELHQRPSRTSDELPYRVICDGGLVASTGVDPYRSPPAE 335
V ++ A RV R A W +R + LP+ + DGGLV G R P
Sbjct: 31 VLLRLPSLADRVRLRAACRPWRTDAKRQAALPPPLPWFALRDGGLVDHHGAPVRRCAPIL 90
Query: 334 RRPPSGLNAIGRITDL 287
R + A+ + L
Sbjct: 91 REGVTDYLAVDNLAFL 106
>12_02_0643 - 21461123-21461902
Length = 259
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 358 PYRSPPAERR-PPSGLNAIGRITDLPLPRKP 269
P R+PP ERR PS L R P PR P
Sbjct: 200 PSRTPPPERRESPSPLRGRPRTPPPPRPRPP 230
>10_08_0742 + 20244984-20247008
Length = 674
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 341 GRRAIWIHSGARYKATVAYDSVRKLIRRT*RSLVQFAPARLRCPLXHPPRSTTPLHK 511
G+R + + S +A V YD K++ T + P R R PL P+ K
Sbjct: 186 GKRNLTLESAQPIQAWVDYDGSAKILNVTIAPVASTVPTRPRRPLISHAVDLLPIFK 242
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -3
Query: 460 AGWGELHQRPSRTSDELPYRVICDGGLVASTGVDPYRSPPAERRPPSGLNAIGRITDLPL 281
+G ++ SR SD L + G L + P SPPA PP + + ++ P
Sbjct: 327 SGLWQVRSPASRFSD-LGALAVPLGSLKTRRAIAPPPSPPATTHPPPSPDLMVQVPAPPA 385
Query: 280 PRKPL 266
P P+
Sbjct: 386 PPTPM 390
>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
Length = 246
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 357 GSTPVLATR--PPSHMTLYGSSSDVREGRWCSSPQPAF 464
GS V AT PP+ YG SD +G WC+ P+P F
Sbjct: 91 GSITVTATNFCPPN----YGLPSD--DGGWCNPPRPHF 122
>05_04_0264 +
19537582-19537919,19539670-19539826,19539939-19540092,
19540281-19540417
Length = 261
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 303 PIAFKPLGGRLSAGGERYGSTPVLATRPPSHMTLYGSSSDVREGRWCSS 449
P+A +PL S R ST A PP H+TL S +W +S
Sbjct: 13 PLAARPLSALASFFLARPSSTA--AAPPPRHVTLSCSRPHCNHNQWAAS 59
>01_07_0243 + 42240553-42240750,42241114-42241255,42242327-42242442
Length = 151
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 189 GGELSCESARASVTGPTTTAAPIQPYSGFLGNGKSVIR 302
G +C A V AA +QPY+G + KS+I+
Sbjct: 88 GRRANCNLAYLGVQRSKAAAASLQPYAGHMRAMKSIIQ 125
>01_01_0680 + 5217633-5219072
Length = 479
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 363 TPVLATRPPSHMTLYGSSSDVREGRWCSSPQPAFAVRSXTRHALPLR 503
TP+LA RPP M+L + + EG + +R + LP R
Sbjct: 333 TPLLAIRPPDDMSLPDVVAKMNEGLGSGKVENGEYLRMYLKEDLPSR 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,733
Number of Sequences: 37544
Number of extensions: 312503
Number of successful extensions: 1182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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