Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0980
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U78168-1|AAD12740.1| 881|Homo sapiens cAMP-regulated guanine nu... 32 1.1
BC092404-1|AAH92404.1| 881|Homo sapiens Rap guanine nucleotide ... 32 1.1
BC017728-1|AAH17728.1| 881|Homo sapiens Rap guanine nucleotide ... 32 1.1
AF103905-1|AAC83381.1| 881|Homo sapiens Rap1 guanine-nucleotide... 32 1.1
AB001343-1|BAA20386.1| 111|Homo sapiens DDX10-NUP98 fusion prot... 30 4.4
U20158-1|AAC50135.1| 533|Homo sapiens SLP-76 protein. 29 7.7
BT007273-1|AAP35937.1| 533|Homo sapiens lymphocyte cytosolic pr... 29 7.7
BC016618-1|AAH16618.1| 533|Homo sapiens lymphocyte cytosolic pr... 29 7.7
AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor... 29 7.7
>U78168-1|AAD12740.1| 881|Homo sapiens cAMP-regulated guanine
nucleotide exchange factor I protein.
Length = 881
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 230 RTYHHCRPHSTLQRLPRQRQVSYPSDSVQAAGRASLCGRRAIWIHSGARYKATVAYDSVR 409
R HHCR H+ + P + +VS+ + Q A R S C +++ S A +T AY
Sbjct: 808 RMLHHCRSHNPVPLSPLRSRVSHLHEDSQVA-RISTCSEQSLSTRSPA---STWAYVQQL 863
Query: 410 KLI 418
K+I
Sbjct: 864 KVI 866
>BC092404-1|AAH92404.1| 881|Homo sapiens Rap guanine nucleotide
exchange factor (GEF) 3 protein.
Length = 881
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 230 RTYHHCRPHSTLQRLPRQRQVSYPSDSVQAAGRASLCGRRAIWIHSGARYKATVAYDSVR 409
R HHCR H+ + P + +VS+ + Q A R S C +++ S A +T AY
Sbjct: 808 RMLHHCRSHNPVPLSPLRSRVSHLHEDSQVA-RISTCSEQSLSTRSPA---STWAYVQQL 863
Query: 410 KLI 418
K+I
Sbjct: 864 KVI 866
>BC017728-1|AAH17728.1| 881|Homo sapiens Rap guanine nucleotide
exchange factor (GEF) 3 protein.
Length = 881
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 230 RTYHHCRPHSTLQRLPRQRQVSYPSDSVQAAGRASLCGRRAIWIHSGARYKATVAYDSVR 409
R HHCR H+ + P + +VS+ + Q A R S C +++ S A +T AY
Sbjct: 808 RMLHHCRSHNPVPLSPLRSRVSHLHEDSQVA-RISTCSEQSLSTRSPA---STWAYVQQL 863
Query: 410 KLI 418
K+I
Sbjct: 864 KVI 866
>AF103905-1|AAC83381.1| 881|Homo sapiens Rap1 guanine-nucleotide
exchange factor protein.
Length = 881
Score = 32.3 bits (70), Expect = 1.1
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +2
Query: 230 RTYHHCRPHSTLQRLPRQRQVSYPSDSVQAAGRASLCGRRAIWIHSGARYKATVAYDSVR 409
R HHCR H+ + P + +VS+ + Q A R S C +++ S A +T AY
Sbjct: 808 RMLHHCRSHNPVPLSPLRSRVSHLHEDSQVA-RISTCSEQSLSTRSPA---STWAYVQQL 863
Query: 410 KLI 418
K+I
Sbjct: 864 KVI 866
>AB001343-1|BAA20386.1| 111|Homo sapiens DDX10-NUP98 fusion protein
type 2 protein.
Length = 111
Score = 30.3 bits (65), Expect = 4.4
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 254 HSTLQRLPRQRQV----SYPSDSVQAAGRASLCGRRAIWIHSGARYKATVAYDSVRKLIR 421
++ ++ LP++RQ + + SV+ R SL +W+H A+Y+ S++KL+
Sbjct: 46 NAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYR-----KSIKKLVL 100
Query: 422 RT*RSLVQFAP 454
+ + F+P
Sbjct: 101 KNLNNSNLFSP 111
>U20158-1|AAC50135.1| 533|Homo sapiens SLP-76 protein.
Length = 533
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 373 STGVDPYRSPPAERRPPSGLNAIGRITDLPLPRKP 269
S + PY S RPP + A GR LPLP KP
Sbjct: 374 SASLPPYFSQGPSNRPP--IRAEGRNFPLPLPNKP 406
>BT007273-1|AAP35937.1| 533|Homo sapiens lymphocyte cytosolic
protein 2 (SH2 domain containing leukocyte protein of
76kD protein.
Length = 533
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 373 STGVDPYRSPPAERRPPSGLNAIGRITDLPLPRKP 269
S + PY S RPP + A GR LPLP KP
Sbjct: 374 SASLPPYFSQGPSNRPP--IRAEGRNFPLPLPNKP 406
>BC016618-1|AAH16618.1| 533|Homo sapiens lymphocyte cytosolic
protein 2 (SH2 domain containing leukocyte protein of
76kD protein.
Length = 533
Score = 29.5 bits (63), Expect = 7.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 373 STGVDPYRSPPAERRPPSGLNAIGRITDLPLPRKP 269
S + PY S RPP + A GR LPLP KP
Sbjct: 374 SASLPPYFSQGPSNRPP--IRAEGRNFPLPLPNKP 406
>AF182077-1|AAF62874.1| 1509|Homo sapiens glioma tumor suppressor
candidate region protein 1 protein.
Length = 1509
Score = 29.5 bits (63), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 273 FLGNGKSVIRPIAFKPLGGRLSAGGERYGSTPVLATRPPSHM 398
++ + +S+ PIA G RL G S P +T+PP H+
Sbjct: 1150 YVSSSRSLGLPIAASSEGHRLPGHGPLSSSAPGASTQPPPHL 1191
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,929,805
Number of Sequences: 237096
Number of extensions: 1492074
Number of successful extensions: 4055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -