Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0980
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical ...    29   1.6  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    27   6.3  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    27   6.3  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    27   6.3  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    27   6.3  
Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z77654-5|CAE17774.1|  204|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AL034365-7|CAA22259.1|  421|Caenorhabditis elegans Hypothetical
           protein Y69E1A.7 protein.
          Length = 421

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 207 ESARASVTGPTTTAAPIQPYSG-FLGNGKSVIRPIA 311
           E    +VTGPT TA+    Y G FLG   +++  IA
Sbjct: 229 EGGNRTVTGPTATASIFATYPGPFLGTFNAIVDQIA 264


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 332 SLCGRRAIWIHSGARYKATVAYDSVRKLIRRT*RSL 439
           +L  R+A W+ +G+  +  V Y ++R L+R   R L
Sbjct: 452 NLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKREL 487


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 189 GGELSCESARASVTGPTTT---AAPIQPYSGFLGNGKSVIRPIAFKPLGGRLSAGGERYG 359
           GG     +A A+ TG   +   A+   P  G  GN  +     A        ++ G  +G
Sbjct: 295 GGLFGASTAPAAATGGLFSIGAASASTPSVGLFGNSSASTTAAAAPATAPAAASTGGLFG 354

Query: 360 STPVLATRPPSHMT--LYGSSS 419
           +T   A  P S  T  L+GS++
Sbjct: 355 ATTAAAAAPTSSTTGGLFGSTA 376


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 332 SLCGRRAIWIHSGARYKATVAYDSVRKLIRRT*RSL 439
           +L  R+A W+ +G+  +  V Y ++R L+R   R L
Sbjct: 452 NLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKREL 487


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 332 SLCGRRAIWIHSGARYKATVAYDSVRKLIRRT*RSL 439
           +L  R+A W+ +G+  +  V Y ++R L+R   R L
Sbjct: 452 NLVVRQAAWLAAGSVVRGIVDYKNIRPLVREDKREL 487


>Z81089-4|CAB03138.3|  425|Caenorhabditis elegans Hypothetical
           protein F53H4.5 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 160 TFCSK*NKPVSLHIQLGLQERHLSQSQVSLH 68
           TFC+      SL  ++  +E+HL +SQ  +H
Sbjct: 290 TFCNTMQAMESLQAEIAKEEKHLMKSQPQVH 320


>Z77654-5|CAE17774.1|  204|Caenorhabditis elegans Hypothetical
           protein C50B8.6 protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 401 SVRKLIRRT*RSLVQFAPARLRCPLXHP--PRSTTP 502
           S R L+ +T RS   F P R+R  + H   P  T P
Sbjct: 114 SKRMLVEKTRRSTADFGPQRMRTSMRHVQIPMETEP 149


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 198 LSCESARASVTGPTTTAAPIQPYSGFLGNGKSVIRPIAFKPLGG 329
           ++C +    ++ PTT+++  + ++  + NGK+   P +F   GG
Sbjct: 13  VACAAGGVVMSAPTTSSSTDEDFAKPVKNGKTFANPKSFTNWGG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,078
Number of Sequences: 27780
Number of extensions: 226337
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)