Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0978
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   106   2e-24
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   0.84 
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   1.1  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   5.9  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   5.9  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   7.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  106 bits (255), Expect = 2e-24
 Identities = 49/78 (62%), Positives = 63/78 (80%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 384 NGHIGLGVKCSKEVATAI 437
           +GH+GLG+KC+KEVATAI
Sbjct: 107 DGHVGLGIKCAKEVATAI 124



 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKDSRSLISSSARP*MMRFLRSCLYR 324
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK+ +  I     P +   +   +  
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQ--IVDYFLPRLNDEVMKVVPV 85

Query: 325 NKHVPDSAHVS-RHLLPLATTTVILVWV*SAARKSPLPFRGAIILAKLSVLPV 480
            K          +  + +  +   +      A++     RGAII+ KLS++P+
Sbjct: 86  QKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPI 138


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 256 SRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 363
           SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 329 LFLYRHDLKNLIIQGRAEEEINDLESLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 156
           L +Y   L+NL+ QG+A E +N ++ +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 183 RPSCSRRKNRQTREHLLVFFTNQRFEIIDFFLGPSLNDE 299
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 238 SLPIKDSRSLISSSARP*MMRFLRSCLYRNK 330
           ++ +K SR+    S  P MMRF+  C++  K
Sbjct: 34  TIVLKRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 434 GSGDFLAALHTQTNMTVVVANGNKCLETCA 345
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,690
Number of Sequences: 5004
Number of extensions: 33502
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)