Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0978
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 99 9e-22
07_01_0756 + 5819367-5820038,5820847-5821005 95 2e-20
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 46 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 33 0.16
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.0
02_03_0163 + 15859293-15860333 29 2.0
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 7.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 99 bits (238), Expect = 9e-22
Identities = 45/54 (83%), Positives = 49/54 (90%)
Frame = +3
Query: 276 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 437
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAI
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAI 134
Score = 62.9 bits (146), Expect = 1e-10
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Frame = +1
Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKDSR--SLISSSARP*MMRFLRSCL 318
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K+ + + + +M+ + +
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLVPGLKDEVMKI--TPV 95
Query: 319 YRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFRGAIILAKLSVLPV 480
+ ++ + + V A++ RGAIILAKLSV+PV
Sbjct: 96 QKQTRAGQRTRFKAFVVVGDNNGHVGLGV-KCAKEVATAIRGAIILAKLSVVPV 148
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 95.5 bits (227), Expect = 2e-20
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +3
Query: 276 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 437
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAI
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAI 137
Score = 61.7 bits (143), Expect = 3e-10
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +1
Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKDSRSL--ISSSARP*MMRFLRSCL 318
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K+ + + + + +M+ + +
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLVPGLKDEVMKI--TPV 98
Query: 319 YRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFRGAIILAKLSVLPV 480
+ ++ + + V A++ RGAIILAKLSV+PV
Sbjct: 99 QKQTRAGQRTRFKAFVVVGDGDGHVGLGV-KCAKEVATAIRGAIILAKLSVVPV 151
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/51 (37%), Positives = 34/51 (66%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAISR 443
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITK 221
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 363 FVAIGDNNGHIGLGVKCSKEVATAIS 440
FV +GD + HI LGVKC+K AT +S
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMS 25
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 425 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 309
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>02_03_0163 + 15859293-15860333
Length = 346
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 349 HVSRHLLPLATTTVILVWV*SAARKSPLPFRGAIILAKLSVLPV 480
H + +PLATT +L +A+ P P R A +L +++LPV
Sbjct: 3 HAAAAAVPLATTVAMLYARLAASLTGPGPRRLAALLPAMALLPV 46
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 151 LPCRAHDHGRDXDRVHEDRHGLYLHRVIRXRRENRHVHRLEQRPPLLNE 5
L C AH G D H L + +R R+ + +RL +R PL++E
Sbjct: 1048 LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISE 1096
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,164
Number of Sequences: 37544
Number of extensions: 242576
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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