Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0978
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    99   2e-21
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    28   3.1  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    27   7.0  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 50/63 (79%), Positives = 54/63 (85%)
 Frame = +3

Query: 249 QRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
           + FEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 429 TAI 437
           TAI
Sbjct: 145 TAI 147



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 37/111 (33%), Positives = 55/111 (49%)
 Frame = +1

Query: 148 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKDSRSLISSSARP*MMRFLRSCLYRN 327
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK+   +I +         L+    + 
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEF-EIIDALCSNLKDEVLKISPVQK 110

Query: 328 KHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFRGAIILAKLSVLPV 480
           +         +  + +      +      +++     RGAI+ AKL+V+PV
Sbjct: 111 QTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPV 161


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 368 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 282
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 151 DQKEWVPVTKLGRLVREGKIDKLESI----YLFSLPIKDSRSLISSSARP*MMRFLRSCL 318
           DQ +   ++K    +     D L+SI    YL +  IKD +  I+ S+ P ++  + +  
Sbjct: 574 DQLDLPSISKKQLKIATFGSDNLQSIKSKGYLVNFLIKDKKIPIALSSVPSIVNSITTAK 633

Query: 319 YRNKHVPDSAHVSRHLLPLATT 384
              + V D  H    +LP  TT
Sbjct: 634 INEETVQDLIHNDNAILPRTTT 655


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 459 SKDNSASKWQWRLPCCTSHPNQYDRC-CRQWQQMP*NVCA 343
           ++D  A + Q + P C   P Q D C C+  QQ P   CA
Sbjct: 59  AQDPCACQPQQQQPACNCAPVQQDPCACQPQQQQPACNCA 98


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 323 LYRHDLKNLII--QGRAEEEINDLESLIGKENK*MLSSL 213
           LY+  L  L I    R  +EIN +ES+I K+N  ++ +L
Sbjct: 571 LYQEKLNKLNIARNARKNDEINKIESIINKKNIEIIKNL 609


>Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical
           protein C44C10.8 protein.
          Length = 226

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 162 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTR 335
           V S   T    SR++  + +EH      N  FEI+   + P L  E  K +P  K  R
Sbjct: 12  VSSLESTDSKKSRKEKSREKEHRRAQCINSAFEILQQHI-PYLKSEERKSLPKIKTLR 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,095,088
Number of Sequences: 27780
Number of extensions: 201277
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)