Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0977
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   2.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    23   5.3  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    23   5.3  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    23   5.3  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    23   5.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   9.2  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +1

Query: 100 GDHGISTANESSSSMPDPTEGHQNISLKDLKMAMXVLNLQQKPAKTTEEALQKH 261
           G H I  A     +M    + H+N SL D + A+       KP   ++  ++ H
Sbjct: 271 GKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQ----DYKPELASDPIIRSH 320


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 202 PLPFLSLLMKCFDD 161
           P+PF+ L + CF D
Sbjct: 340 PIPFVKLFVNCFTD 353


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 133 NSHLP*IYHDLRLHHVFSCFYFSFSEVS 50
           N+ L  +YH  RL +   C +FS + +S
Sbjct: 149 NNCLEFLYHTKRLSYDVKCDFFSAARIS 176


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 175 KCFDDLQLDLALMTNSHLP*IYHDLRLHHVF 83
           K FD  +  + L   S    +Y +L  HH+F
Sbjct: 491 KYFDQRECTICLCEYSEESPLYRELPCHHIF 521


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 115 STANESSSSMPDPTEGHQNIS 177
           ST  +   S+P P +GH++IS
Sbjct: 102 STVIKKQFSVPKPIKGHEDIS 122


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 53   NLRKRKIKTRKNVVETEIMVYLRQMRVRHQCQIQLKVIKTF 175
            N R   +K  KN++ET     +RQ ++  +  ++L+  K F
Sbjct: 1151 NQRMNALKV-KNIIETNYENLVRQTKLIGRAALELRDSKVF 1190


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 89  VVETEIMVYLRQMRVRHQCQIQ 154
           +V ++I V LRQMR+     +Q
Sbjct: 312 IVLSQIFVLLRQMRINSPSHVQ 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.301    0.121    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 913,439
Number of Sequences: 5004
Number of extensions: 14744
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)