Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0977
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0127 + 12573429-12574857,12575269-12575903                       26   3.6  
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125     26   4.8  
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    26   4.8  
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025...    25   6.3  
03_02_0453 + 8621605-8623332                                           25   6.3  
06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    25   8.3  
06_02_0217 + 13170731-13170826,13170886-13171203                       25   8.3  
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    25   8.3  

>09_03_0127 + 12573429-12574857,12575269-12575903
          Length = 687

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 88  RGGDGDHGISTANESSSSMPDPTEGHQNISLKDLKMAMXVLNLQQKP 228
           RGGDGD   + AN S SS  +  E    I+  +LK +  +     +P
Sbjct: 510 RGGDGDGDGANANLSFSSSYEEDEAGGAIAHGNLKASNILFTATMEP 556


>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
          Length = 790

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 208 VPPLPFLSLLMKCFDDLQLDLALMTNSHLP*IYHDLRL 95
           +PPLPFL LL      L L L L ++ HLP I   L L
Sbjct: 99  LPPLPFLPLLRPLHLLLALPL-LASHPHLPTILLPLLL 135


>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 88  RGGDGDHGISTANESSSSMPD 150
           R G+GD   S A  S+SSMPD
Sbjct: 128 RSGEGDATQSAAAASTSSMPD 148


>07_03_0359 -
           17201711-17201803,17202185-17202332,17202437-17202574,
           17204331-17204416,17205233-17205283,17205774-17205858,
           17205930-17206081
          Length = 250

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 94  HHVFSCFYFSFS-EVSHR 44
           HH F+CF  SF+ E+ HR
Sbjct: 49  HHSFTCFLTSFTDEIPHR 66


>03_02_0453 + 8621605-8623332
          Length = 575

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +1

Query: 94  GDGDHGISTANESSSSMPDPTEGHQNISLKDLKMAMXVLNLQQKPAKTTEEA 249
           G      +T N  S    DPT+G     L+ L + M        P K+ E A
Sbjct: 102 GSNPSSTTTTNPGSPVFDDPTQGCPEKGLRLLHLLMAAAEALSGPHKSRELA 153


>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 242 SVVFAG-FCCKFSTXIAIFKSFNEM 171
           SVVFA  F C FS+ IA+FK   ++
Sbjct: 235 SVVFATLFMCCFSSVIALFKDIPDI 259


>06_02_0217 + 13170731-13170826,13170886-13171203
          Length = 137

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 47  MRNLRKRKIKTRKNVVE 97
           M+ ++KRKI+TR+ VVE
Sbjct: 62  MKRIKKRKIETRQIVVE 78


>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 19/78 (24%), Positives = 25/78 (32%)
 Frame = +1

Query: 28  DFSKENDEKPQXXXXXXXXXRGGDGDHGISTANESSSSMPDPTEGHQNISLKDLKMAMXV 207
           D   E D +            G   DH  S   +   S  DP   H    L DL+     
Sbjct: 497 DTDSETDPEETTDLEGSDTAVGATADHCASDEQDEEISQADPNISH---VLSDLESFDLA 553

Query: 208 LNLQQKPAKTTEEALQKH 261
             + +   K  +EA  KH
Sbjct: 554 SEVSKNSTKKKKEASYKH 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.301    0.121    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,976,387
Number of Sequences: 37544
Number of extensions: 98080
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)