Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0975
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 130 2e-31
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 101 1e-22
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 97 2e-21
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 92 5e-20
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 90 2e-19
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 83 3e-17
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 77 3e-15
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 73 5e-14
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 72 6e-14
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 70 2e-13
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 67 2e-12
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 66 4e-12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 64 1e-11
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 63 4e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 60 2e-10
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 48 1e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 47 2e-06
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 43 3e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 41 2e-04
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 0.98
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 28 1.3
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 2.3
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 26 5.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.9
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.1
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 25 9.1
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 130 bits (313), Expect = 2e-31
Identities = 63/72 (87%), Positives = 64/72 (88%)
Frame = +1
Query: 40 FFRSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
F TSADREIQRTLMELLNQMDGFD LGQ KIIMATNRP TLDPALLRPGRLDRKIEIP
Sbjct: 242 FSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
Query: 220 LPNEQARLEILK 255
LPNE R+EILK
Sbjct: 302 LPNEVGRMEILK 313
Score = 103 bits (246), Expect = 3e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = +3
Query: 249 LEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVR 428
L+IH ++K GE+DYEA+VKL+D NGADLRNV TEAG AI+ +R+Y+IQ DLM A R
Sbjct: 312 LKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAAR 371
Query: 429 KVADNKKLESKLDYK 473
KVAD KKLE +DY+
Sbjct: 372 KVADLKKLEGTIDYQ 386
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +2
Query: 2 IFMDEIDAIGGRRFSE 49
IFMDEIDAIGGRRFSE
Sbjct: 229 IFMDEIDAIGGRRFSE 244
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 101 bits (241), Expect = 1e-22
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = +1
Query: 40 FFRSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
F + DRE+QRT++ELLNQ+DGF S +VK+I ATNR TLDPALLR GRLDRK+E P
Sbjct: 295 FDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFP 354
Query: 220 LPNEQARLEILK 255
LPNE+AR+ IL+
Sbjct: 355 LPNEEARVGILR 366
Score = 48.4 bits (110), Expect = 9e-07
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +3
Query: 240 IGNLEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMK 419
+G L IH+ +A ++++E + + +D +NGA L++VC EAG+ A+R I E M
Sbjct: 362 VGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMD 421
Query: 420 AVRKVADNK 446
+ +V K
Sbjct: 422 GILEVQMRK 430
Score = 28.3 bits (60), Expect = 0.98
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 2 IFMDEIDAIGGRRFSEARA 58
IF+DE+DAIG +RF +A
Sbjct: 282 IFIDELDAIGTKRFDSEKA 300
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 96.7 bits (230), Expect = 2e-21
Identities = 43/67 (64%), Positives = 55/67 (82%)
Frame = +1
Query: 55 SADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQ 234
S D E+QRT++ELLNQ+DGF++ +K+IMATNR LDPALLRPGR+DRKIE P P+ +
Sbjct: 261 SGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAE 320
Query: 235 ARLEILK 255
AR EIL+
Sbjct: 321 ARAEILR 327
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 249 LEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVR 428
L IH+ + +D +++ + + +GA+L+ VCTEAG+FA+R R ++ QED AV
Sbjct: 326 LRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVA 385
Query: 429 KV 434
KV
Sbjct: 386 KV 387
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 92.3 bits (219), Expect = 5e-20
Identities = 44/60 (73%), Positives = 47/60 (78%)
Frame = +1
Query: 40 FFRSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
F T ADRE+QR L+ELL QMDGFD VK+IMATNR TLDPALLRPGRLDRKIE P
Sbjct: 244 FDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFP 303
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 285 EMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVADNKKLESKL 464
E+D + + D +GA + + +AGL A+R R I+Q D+ +A + +E
Sbjct: 327 EVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAVKPTDMEQFA 386
Query: 465 DYK 473
YK
Sbjct: 387 FYK 389
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 90.2 bits (214), Expect = 2e-19
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +1
Query: 40 FFRSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
F D E+QRT++EL+ Q+DGFD G +K++ ATNRP TLD AL+RPGR+DRK+E
Sbjct: 289 FDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEFG 348
Query: 220 LPNEQARLEILK 255
LP+ + R IL+
Sbjct: 349 LPDLEGRAHILR 360
Score = 66.5 bits (155), Expect = 3e-12
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +3
Query: 249 LEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVR 428
L IHA +A ++ +E + +L + GA+LR+VCTEAG+FAIRA R ++D + AV+
Sbjct: 359 LRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRVATEKDFLDAVQ 418
Query: 429 KVA-DNKKLESKLDY 470
KV N+K S DY
Sbjct: 419 KVVKGNQKFSSTADY 433
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 2 IFMDEIDAIGGRRFSE 49
IF DEIDAIGG RF +
Sbjct: 276 IFFDEIDAIGGARFDD 291
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 83.0 bits (196), Expect = 3e-17
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Frame = +1
Query: 52 TSADREIQRTLMELLNQMDGFD-SLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPN 228
+ A+REIQRT++ELLNQ+DGFD S +K+IMATNR LDPAL+RPGR+DRKI P+
Sbjct: 305 SGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPD 364
Query: 229 EQARLEI 249
E + +I
Sbjct: 365 EATKRKI 371
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/64 (29%), Positives = 37/64 (57%)
Frame = +3
Query: 255 IHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 434
IH S + +++ E +++ D +GA+++ + +EAGL A+R R ++ +D +A KV
Sbjct: 374 IHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKV 433
Query: 435 ADNK 446
K
Sbjct: 434 LKTK 437
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 2 IFMDEIDAIGGRRFSEARAPIER 70
+F+DEIDAIG +R+ +A++ ER
Sbjct: 288 VFIDEIDAIGTKRY-DAQSGAER 309
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = +1
Query: 46 RSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLP 225
RS+ ++ + LL MDG D+ GQV +I ATNRP LDPAL RPGR DR+ PLP
Sbjct: 486 RSSKQEQTHSSIVSTLLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLP 545
Query: 226 NEQARLEILK 255
N+QAR++IL+
Sbjct: 546 NKQARMKILE 555
Score = 28.3 bits (60), Expect = 0.98
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 324 FNGADLRNVCTEAGLFAIR 380
+ GADL+ +CTEA L A+R
Sbjct: 580 YGGADLKALCTEAALNAVR 598
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 72.5 bits (170), Expect = 5e-14
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +1
Query: 76 RTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQARLEILK 255
R + ++L QMDG +SL V I+ AT RP +DPALLRPGRLD+ I LPNE+ RLE+L+
Sbjct: 725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 72.1 bits (169), Expect = 6e-14
Identities = 33/60 (55%), Positives = 45/60 (75%)
Frame = +1
Query: 76 RTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQARLEILK 255
R + +LL +MDG +S V +I ATNRP +DPAL+RPGRLD+ I +PLP+E+AR IL+
Sbjct: 618 RVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQ 677
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +1
Query: 73 QRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQARLEIL 252
+R + +LL MDG + V ++ ATNRP ++DPAL R GR DR++++ +P+ RLEIL
Sbjct: 342 RRVVSQLLTLMDGMKARSNVVVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEIL 401
Query: 253 K 255
+
Sbjct: 402 R 402
Score = 33.5 bits (73), Expect = 0.026
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 231 TG*IGNLEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYI-IQE 407
TG + L IH + ++D E + + + G+DL ++C+EA + IR + + I + E
Sbjct: 395 TGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDE 454
Query: 408 DLMKA 422
D + A
Sbjct: 455 DEIDA 459
Score = 28.3 bits (60), Expect = 0.98
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 252 EIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQED 410
++ +P+A+ ++D AV K + F+GADL V A AI+ E I+ +
Sbjct: 679 QLRHTPVAE--DVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRE 729
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +1
Query: 61 DREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQAR 240
D R + LLN++DG ++L V ++ ATNRP +DPAL+RPGRLDR + + PN +AR
Sbjct: 660 DNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEAR 719
Query: 241 LEILK 255
+I+K
Sbjct: 720 KQIVK 724
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = +1
Query: 46 RSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLP 225
R+ R + LL +DG + G+V +I ATNRP ++D AL RPGRL+++IEI +P
Sbjct: 388 RTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIP 447
Query: 226 NEQARLEILK 255
++ ARL+I+K
Sbjct: 448 DKSARLDIIK 457
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +3
Query: 249 LEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAERE 392
++I A + ++D + + + ++ +GA++ +C EAGL A+ + E
Sbjct: 723 VKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLE 770
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 TSADREIQRTLME-LLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPN 228
+S +I +++ LL MDG +S GQV II ATNRP +DPAL RPGR DR+ PLP+
Sbjct: 381 SSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPD 440
Query: 229 EQARLEILK 255
AR +I++
Sbjct: 441 RDARKKIIE 449
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 315 SDTFNGADLRNVCTEAGLFAIR 380
S + GADLR +CTEA L +I+
Sbjct: 471 SKGYGGADLRALCTEAALNSIK 492
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 66.1 bits (154), Expect = 4e-12
Identities = 31/70 (44%), Positives = 42/70 (60%)
Frame = +1
Query: 46 RSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLP 225
R S R + LL ++DG V +I ATNRP +DPA+LRPGRLD+ + + LP
Sbjct: 601 RDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLP 660
Query: 226 NEQARLEILK 255
+ R+EILK
Sbjct: 661 DAHERVEILK 670
Score = 50.0 bits (114), Expect = 3e-07
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Frame = +1
Query: 55 SADREIQRTLM-ELLNQMD--GFDSLG--QVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
SA RE++R ++ + L MD F+ V +I ATNRP +LD AL R GR DR+I +
Sbjct: 285 SAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLT 344
Query: 220 LPNEQARLEILK 255
+P++ AR +IL+
Sbjct: 345 VPSQDAREKILR 356
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 249 LEIHASPIAKHGEMDYEAVVKLSDTFNGADLRNVCTEAGLFAIR 380
L A + G+ D+ + K + + GADL+ + AG+ AI+
Sbjct: 355 LRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIK 398
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +1
Query: 67 EIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQARLE 246
E + TL +LL +MDGF S + + TNRP LDPALLRPGR DR+I I P+ R +
Sbjct: 415 ERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQ 474
Query: 247 ILK 255
I K
Sbjct: 475 IFK 477
Score = 33.5 bits (73), Expect = 0.026
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 252 EIHASPIAKHGEMDYEA--VVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAV 425
++H I +D A + L+ F GAD+ NVC E L A R+ + +A+
Sbjct: 477 KVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAI 536
Query: 426 RKVADNKKLESKL 464
+V + +S++
Sbjct: 537 ERVTAGLEKKSRV 549
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 62.9 bits (146), Expect = 4e-11
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +1
Query: 88 ELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQARLEILK 255
+LL +MDG D L + +I TNR +D ALLRPGRL+ +EI LP+E RL+ILK
Sbjct: 404 QLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILK 459
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 60.5 bits (140), Expect = 2e-10
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Frame = +1
Query: 70 IQRTLMELLNQMDGF----DSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPLPNEQA 237
+++TL +LL +DGF D V I ATN P +LDPAL RPGR DR I +PLP+ +
Sbjct: 383 MRQTLNQLLVDLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRG 442
Query: 238 RLEIL 252
RL IL
Sbjct: 443 RLAIL 447
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Frame = +1
Query: 49 STSADREIQRTLMELLNQMDGF--DSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIPL 222
S+ + + R + +LL ++D D+ V +I ATNRP LDP+LLRPGR D+ + + +
Sbjct: 766 SSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGI 825
Query: 223 -PNEQARLEILK 255
+E+++ +L+
Sbjct: 826 NKSEESKASMLR 837
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = +1
Query: 79 TLMELLNQMDGFDSLGQVKIIMATNRPXTLDPALLRPGRLDRK 207
T LLN +DG S + I M TN P LDPAL+RPGR+D K
Sbjct: 323 TFSGLLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVK 365
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 43.2 bits (97), Expect = 3e-05
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 46 RSTSADREIQRTLMELLNQMDGF--DSLGQVKIIMATNRPXTLDPALLRPGRLDRKIEIP 219
RS +R E L QM+G D G V ++ ATN P TLD A+ R R +++I IP
Sbjct: 237 RSEGESESSRRIKTEFLVQMNGVGKDESG-VLVLGATNIPWTLDSAIRR--RFEKRIYIP 293
Query: 220 LPNEQARLEILK 255
LPN AR + +
Sbjct: 294 LPNAHARARMFE 305
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +1
Query: 34 ETFFRSTS-ADREIQRTLM-ELLNQMDGFDSLGQVKIIM--ATNRPXTLDPALLRPGRLD 201
+TF R D E + E ++ DG S GQ ++++ ATNRP +D A+ R R+
Sbjct: 194 DTFLRQRQRTDHEAMAQIKAEFMSMWDGLLS-GQSRVLVLGATNRPADIDEAIRR--RMP 250
Query: 202 RKIEIPLPNEQARLEILK 255
+ IPLPN + R +IL+
Sbjct: 251 KVFSIPLPNAEQRRKILE 268
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 28.3 bits (60), Expect = 0.98
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 293 VHLAVLGDRRRVDFKISNLACSLGRG-ISIFLSNLPGLSRAGSSVSGLLVAMMIFTCPKE 117
++L G+R R+D +ISN G I +++S + + V L + CPKE
Sbjct: 716 LYLKNCGERLRIDLEISNTGPMSGAEIIQVYISQI--VRSVNRPVKELKEFSKVVLCPKE 773
Query: 116 SK 111
+K
Sbjct: 774 TK 775
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 291 DYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKV 434
D EA+VK ++ ++G+DL + +A + +R+ E ++ M+++R +
Sbjct: 659 DIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGESLLFTK-MESIRPI 705
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 152 LVAMMIFTCPKESKPSIWFNNSIRVRWISRSALVLRKN 39
L +++ KE+KPS+W +N +R+ I+ + N
Sbjct: 155 LFSLLADAISKETKPSVWGDNFLRIILINLPYFIAANN 192
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 135 LHLSQGVETIHLVQQLHQGTLDLSIG 58
L++ + V+ +HL+Q LDLS+G
Sbjct: 229 LNVYESVDVMHLIQDGDYSNLDLSVG 254
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 291 DYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYIIQEDLMKAVRKVAD 440
D VV+ S ++ D G + A + I++ED+ KAV K D
Sbjct: 991 DLSPVVRRSLLYSVQDGLGALARGGTKSDVASEDLIVEEDITKAVEKRID 1040
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 16 DRCHRWETFFRSTSADREIQRTLMELLNQMDGFDSLGQVKIIMATNRPXTLD 171
D C R ETF +S +AD ++Q L+ ++ +V I++ + P D
Sbjct: 161 DFCARPETFVKSDTADIKLQIHQNNLVLTFLDTTTVSKVNIVLEIHIPVLRD 212
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 13 RDRCHRWETFFRSTSADREIQRTLMEL---LNQMDGFDSLGQVKIIMATNRPXTLDPALL 183
R+ +R F S AD +QRT+ + +N M G + Q +I TN+ TLD +
Sbjct: 107 REEQNRTLNFLMSGMAD--LQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSV 164
Query: 184 RPGRLD 201
R D
Sbjct: 165 RAENRD 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,194
Number of Sequences: 5004
Number of extensions: 47513
Number of successful extensions: 188
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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