Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0970
         (375 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   7.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   9.5  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   9.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 288  TTTVRANQAVTVPPP 244
            TTT    Q  T+PPP
Sbjct: 1075 TTTNWPTQGTTIPPP 1089


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 362 SLGSRETLPSVGSRSPPRIFIKVDLPLPF 276
           S  S +T+ SVG+ +PP      D PL F
Sbjct: 18  SCSSDDTVLSVGNENPP----PEDTPLSF 42


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 214 AVV*KHFRQIWRRH 255
           A + K FR++W +H
Sbjct: 162 ATLIKEFREVWDQH 175


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 183 PVTSPCSSAVSRCLKTFPSNLAAAPLRPDW 272
           P+T+   +A+S  L++       AP RP +
Sbjct: 122 PITTDNVAAISGVLRSLLDRPLPAPERPSF 151


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 118 RRSCSSLKVYTQAKGKKCDFV 56
           R  C   +V+    GKKCD+V
Sbjct: 206 RSGCKLGQVFDDV-GKKCDWV 225


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 122 RLMA*CAVCHISFQDTPVL 178
           R++  C VCH  F +  VL
Sbjct: 192 RVLHQCPVCHKKFTNALVL 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,013
Number of Sequences: 336
Number of extensions: 1721
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)