Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0970
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 42 2e-05
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 42 3e-05
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 42 4e-05
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 40 1e-04
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 37 0.001
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 36 0.002
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 35 0.004
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 34 0.006
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 33 0.011
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 33 0.015
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 31 0.078
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 30 0.14
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.18
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 28 0.42
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 28 0.42
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 28 0.55
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 27 0.73
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 27 0.73
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 2.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 2.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 25 2.9
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 2.9
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 3.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 24 6.8
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 24 6.8
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 24 9.0
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 24 9.0
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 42.3 bits (95), Expect = 2e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +1
Query: 238 QIWRRHRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERI 369
Q+ R +IG NG+GKST +K+L G+L PT+G + N RI
Sbjct: 696 QVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGEIYQHENCRI 739
Score = 35.5 bits (78), Expect = 0.003
Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 247 RRHRYGLIGANGSGKSTFMK-ILGGDLE 327
R RYGL G NGSGKST M+ I+ G +E
Sbjct: 459 RGRRYGLCGPNGSGKSTLMRAIVNGQVE 486
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 41.9 bits (94), Expect = 3e-05
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERI 369
R G++G NG+GKST +K+L L PT G VS P RI
Sbjct: 546 RIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRI 583
Score = 29.5 bits (63), Expect = 0.18
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKIL 312
RYGL G NG GKST ++ L
Sbjct: 210 RYGLTGRNGIGKSTLLRAL 228
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 41.5 bits (93), Expect = 4e-05
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIG 372
R ++G NG+GKST +K+L G++ P G V PN R+G
Sbjct: 721 RVAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPNLRVG 759
Score = 37.5 bits (83), Expect = 7e-04
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 241 IWRRHRYGLIGANGSGKSTFMKILG 315
++R HRYG++G NG GKST ++ +G
Sbjct: 467 LYRGHRYGVVGHNGCGKSTLLRAIG 491
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 40.3 bits (90), Expect = 1e-04
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 262 GLIGANGSGKSTFMKILGGDLEPTLGNVSLDPN 360
GL+G NG GKST +KIL G ++P LG P+
Sbjct: 107 GLVGTNGIGKSTALKILSGKMKPNLGRYDNPPD 139
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 265 LIGANGSGKSTFMK 306
L+G NG+GK+TF K
Sbjct: 380 LLGENGTGKTTFCK 393
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 36.7 bits (81), Expect = 0.001
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 238 QIWRRHRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGK 375
+I R + G++G G+GKST L +EPT G + +D NE I K
Sbjct: 1249 EISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEID-NEDITK 1293
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 36.3 bits (80), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVSLD 354
+IG +GSGKSTF+ +L PT GN+ LD
Sbjct: 467 IIGPSGSGKSTFISLLLRYFSPTYGNIYLD 496
Score = 26.2 bits (55), Expect = 1.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 250 RHRYGLIGANGSGKSTFMKIL 312
R + ++G +GSGKST +++L
Sbjct: 1128 REKVAIVGISGSGKSTLVELL 1148
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 35.1 bits (77), Expect = 0.004
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGDLEPTLGNVS 348
R ++G NG+GKST + ++ G L P GNVS
Sbjct: 418 RVAIVGKNGTGKSTLLNLITGLLIPIEGNVS 448
Score = 33.9 bits (74), Expect = 0.008
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMK-ILGGDLE 327
RYGL+G NGSGKSTF++ + D+E
Sbjct: 103 RYGLLGDNGSGKSTFLESVAARDVE 127
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 34.3 bits (75), Expect = 0.006
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVSL 351
L+GANG+GKST +K+L G G++S+
Sbjct: 35 LVGANGAGKSTLLKLLSGKSLAKAGHISV 63
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 33.5 bits (73), Expect = 0.011
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 250 RHRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLD 354
+ + G++G G+GKST L +EPT G++ LD
Sbjct: 1251 QEKIGIVGRTGAGKSTLTLALFRLIEPTSGDIQLD 1285
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 33.1 bits (72), Expect = 0.015
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGDLEPT 333
RYGLI NGSGKST + + L PT
Sbjct: 303 RYGLIAPNGSGKSTLLHAIACGLIPT 328
Score = 32.7 bits (71), Expect = 0.019
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 250 RHRYGLIGANGSGKSTFMKILGGDLEPTLGNV 345
+ R L+G NG+GK+T +K++ ++P+ G+V
Sbjct: 620 KSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 30.7 bits (66), Expect = 0.078
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 238 QIWRRHRYGLIGANGSGKSTFMKILGGDLEPT 333
++ R+ + +IG GSG++TF++ + G P+
Sbjct: 26 ELARKQNWAIIGNTGSGRTTFLRCIQGSFTPS 57
Score = 28.3 bits (60), Expect = 0.42
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGD 321
R+ L G+NGSGK+T + + GD
Sbjct: 292 RWALTGSNGSGKTTLLAYVVGD 313
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.9 bits (64), Expect = 0.14
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVSLD 354
L+GA+GSGKST + ++ +P G V LD
Sbjct: 453 LVGASGSGKSTIIGLVERFYDPIGGQVFLD 482
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.5 bits (63), Expect = 0.18
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVSLDPNE 363
L+G +G GKST M+IL + G++++D +
Sbjct: 615 LVGESGGGKSTIMRILLRFFDVNSGSITIDDQD 647
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.3 bits (60), Expect = 0.42
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -1
Query: 267 QAVTVPPPNLTEMFSNN-GLLPNCMVT--LLETNTGVS*KEI*QTAHYAISLKEDPAPRL 97
+ +T P N T+ F N+ LL N VT L+ + + + H I + + A RL
Sbjct: 378 KGITRPLNNTTQRFKNDEDLLENVNVTSPTLKNWPRIIRPPLKRDGHVIIDVCDSDA-RL 436
Query: 96 RSTLKPKAKNVISYTSDFTVSWNEL 22
R + PK++ ++Y +W +L
Sbjct: 437 RRNIVPKSQGKLAYRLARKSAWGDL 461
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 28.3 bits (60), Expect = 0.42
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -1
Query: 267 QAVTVPPPNLTEMFSNN-GLLPNCMVT--LLETNTGVS*KEI*QTAHYAISLKEDPAPRL 97
+ +T P N T+ F N+ LL N VT L+ + + + H I + + A RL
Sbjct: 378 KGITRPLNNTTQRFKNDEDLLENVNVTSPTLKNWPRIIRPPLKRDGHVIIDVCDSDA-RL 436
Query: 96 RSTLKPKAKNVISYTSDFTVSWNEL 22
R + PK++ ++Y +W +L
Sbjct: 437 RRNIVPKSQGKLAYRLARKSAWGDL 461
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.9 bits (59), Expect = 0.55
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 235 RQIWRRHRYGLIGANGSGKSTFMKILGGDLE 327
R I R Y L G GSGK++F+ L G+L+
Sbjct: 237 RGIPYRRGYLLYGPPGSGKTSFLYALAGELD 267
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 0.73
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 241 IWRRHRYGLIGANGSGKSTFMKILGGDLEPTL---GNVSLDPNE 363
I R + YGL SG S ++ L GDLE TL G VS+ P +
Sbjct: 354 IGRPYVYGLALEGSSGVSHVIRCLLGDLELTLHLSGIVSVKPKD 397
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 0.73
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 256 RYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERI 369
+ +GA+G GKST +++L + G + +D N+R+
Sbjct: 471 KVAFVGASGCGKSTILRLLFRFYDTDSGKILID-NQRL 507
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVSL 351
+IG GSGKS+ + L G+L G+ +L
Sbjct: 646 VIGPTGSGKSSLISALLGELSLNKGSYNL 674
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDLEPTLGNVS 348
++G+ GSGKST L G+L G ++
Sbjct: 612 VVGSTGSGKSTLAMALLGELHVISGKMT 639
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 120 KEDPAPRLRSTLKPKAKNVISYTSDFTV 37
K DP +L L+PKA++ I TS V
Sbjct: 44 KHDPFHKLWDRLQPKAQSTIQRTSSLPV 71
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 78 KAKNVISYTSDFTVSWNELIMRF 10
+ K +I YTS TV +ELI+ F
Sbjct: 120 RLKKIIKYTSYVTVKGSELILSF 142
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 214 AVV*KHFRQIWRRHRYGLIGANGSGKSTFM 303
A V F ++R RYGL G NG S +
Sbjct: 468 AKVESSFGTVYRSERYGLRGCNGKELSNIL 497
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 24.6 bits (51), Expect = 5.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 253 HRYGLIGANGSGKSTFMKILGGDLEPT 333
HRY LIG NGS +K GG + T
Sbjct: 967 HRY-LIGPNGSKLQNTIKECGGSTDKT 992
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 265 LIGANGSGKSTFMKILGGDL 324
++G GSGK+TFM+ L L
Sbjct: 13 VVGMAGSGKTTFMQQLNAHL 32
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 24.2 bits (50), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 253 HRYGLIGANGSGKSTF 300
H ++G NGSGKS F
Sbjct: 26 HHNVIVGRNGSGKSNF 41
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 23.8 bits (49), Expect = 9.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 262 GLIGANGSGKSTFMKIL 312
GL G GSGKST IL
Sbjct: 33 GLAGGPGSGKSTLCAIL 49
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 270 NQAVTVPPPNLTEMFSN 220
N + VPPPN +MF N
Sbjct: 233 NASQIVPPPNWAKMFPN 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,719
Number of Sequences: 5004
Number of extensions: 29018
Number of successful extensions: 134
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -