Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0969
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.33
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 29 0.33
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.44
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 0.58
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 28 0.58
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.58
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 1.3
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 1.8
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 1.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 1.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 3.1
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 4.1
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 4.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 4.1
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 5.4
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 7.2
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 7.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 24 9.5
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 24 9.5
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 29.1 bits (62), Expect = 0.33
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = -1
Query: 228 LFHCFFLYSLICFLSSMFKSFQCGMILLH 142
L +C+++YS + +SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSVSSKFRSFTFGCVVVY 80
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 29.1 bits (62), Expect = 0.33
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 83 NVGCSNYQNKTQRDLARE---EICKRIIPHWNDLNMEDKKQIREYKKKQWNNVRD 238
N+G +++ +T DL +E E+ PH + +K+ R KKK ++V D
Sbjct: 69 NIGANSFSAETPVDLKKENETELANISGPHKKSTSTSTRKRARSSKKKATDSVSD 123
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 28.7 bits (61), Expect = 0.44
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -1
Query: 270 IFVSVQYFR*PSLTLFHCFFLYSLICFLSSMFKSFQCGMILLHISSRAKSLC 115
+FV ++ F+ C+ LY ++CF+S + + + C IL+ +S +++C
Sbjct: 13 LFVCLERFQWRGAIFLVCYPLYCVVCFVSVLCRLY-C--ILMSAASATQTIC 61
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 228 LFHCFFLYSLICFLSSMFKSFQCGMILLH 142
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 228 LFHCFFLYSLICFLSSMFKSFQCGMILLH 142
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 0.58
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 228 LFHCFFLYSLICFLSSMFKSFQCGMILLH 142
L +C+++YS + SS F+SF G ++++
Sbjct: 52 LLYCWYIYSEVPSASSKFRSFTFGCVVVY 80
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Frame = +2
Query: 113 TQRDLAREEICKRII---PH---WNDLNMEDKKQIREYKKKQWNNV 232
T+ +L +E+ R++ PH W+++ + + Q+ E+ KK+W ++
Sbjct: 163 TEPELQDQELLPRLLKANPHQQGWSNMMLYLRYQVEEFAKKKWGSM 208
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 1.8
Identities = 8/25 (32%), Positives = 20/25 (80%)
Frame = +1
Query: 379 EDSYEDNETIEIEVRPQTEDEDDED 453
E++ +++E++++E + EDE+DE+
Sbjct: 203 EEASDEDESVDLEEDEEEEDEEDEE 227
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 143 CKRIIPHWNDLNMED 187
CK PHWNDL+ D
Sbjct: 403 CKPFEPHWNDLSPHD 417
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 164 WNDLNMEDKKQIREYKKKQWNNVRDGYRKY*TETKIR 274
W D + + KKQ R ++W +G+RK T I+
Sbjct: 1104 WVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTDIK 1140
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 92 CSNYQNKTQRDLAREEICKRIIP---HWNDLNMEDKKQIREYKKKQ 220
C NY + LA E + K ++ W + + E K+++REYKK Q
Sbjct: 1095 CFNYDRQECEYLA-EIVFKTLVEKEREWRENSEEWKEKMREYKKWQ 1139
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 4.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 23 LKMTEIEDLISEVEKNPCLWNVGCSNYQNKTQRDL--AR-EEICKRIIPHWNDLNMEDKK 193
+K E E ++ + P QN +DL AR ++ C +IP W D E+ K
Sbjct: 282 VKQAEAEVAVNPISAYPLAKVCLLLQTQNADLKDLLFARLQKNCPWVIPFWYDHGTENGK 341
Query: 194 QIREYKK 214
+ +KK
Sbjct: 342 KKMGFKK 348
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 219 CFFLYSLICFLSSMFKSFQCGMILLHIS 136
CFFLYSL+ + FQ +I++H+S
Sbjct: 292 CFFLYSLLTPFFDIHLQFQ--LIVMHMS 317
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 144 AKESSHIGMI*TWKIKSKLGNIKRNNGITSETVTENIEQKQKYARAKEEI 293
A + +G I KI++ G+IK+N+ + + + +E Y A EEI
Sbjct: 474 ASKYKDLGTILEGKIEA--GSIKKNSNVLVMPINQTLEVTAIYDEADEEI 521
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 271 TPVPKKKFIYE----NDLYFLLPVLQNSKSRERXMPSGXHEDSYEDNE 402
T +PK ++E ND + LL + ++SK + PS S ED++
Sbjct: 356 TVIPKSSTVHEPPSSNDSHPLLQLFKDSKISDDDSPSNAEGASTEDSK 403
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 155 IPHWNDLNMEDKKQIREYKKKQWNN 229
+PH L +D K RE +QWN+
Sbjct: 14 LPHLQHLVKKDPKSYREEFLQQWNH 38
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +2
Query: 98 NYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQIREYKKKQ 220
+YQN+T + + ++ +II +D N +K++ R +KKK+
Sbjct: 37 HYQNETIQRIHEKKRAPKIIHIASDENWMEKRKAR-FKKKE 76
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 391 RNYLRXIPMACXVREICC 338
R+YLR P C +R I C
Sbjct: 61 RDYLREFPRPCILRFIAC 78
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 244 PKILNRNKNTPVPKKKFIY 300
PKIL++NKN KK IY
Sbjct: 775 PKILSQNKNYLTETKKDIY 793
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,203
Number of Sequences: 5004
Number of extensions: 37200
Number of successful extensions: 189
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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