Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0969
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    37   0.008
Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical pr...    31   0.39 
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    30   0.69 
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    30   0.69 
Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical pr...    30   0.91 
Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical pr...    30   0.91 
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   1.6  
Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    27   6.4  
Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z70684-2|CAA94596.1|  268|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 36.7 bits (81), Expect = 0.008
 Identities = 24/68 (35%), Positives = 32/68 (47%)
 Frame = +2

Query: 47  LISEVEKNPCLWNVGCSNYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQIREYKKKQWN 226
           LI+EV K PCL+N       +  +R    E I K I P+             E+ KK+W 
Sbjct: 11  LINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNC----------AAEFAKKRWL 60

Query: 227 NVRDGYRK 250
            +RD YRK
Sbjct: 61  QLRDRYRK 68


>Z67755-1|CAA91754.1|  254|Caenorhabditis elegans Hypothetical
           protein F54F7.1 protein.
          Length = 254

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 95  SNYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQIREYKKKQ 220
           +N Q+KT R LA+E++ +   PH     M++ K+ R  KKK+
Sbjct: 143 TNVQSKTARQLAKEKVKEYHYPHGITPPMKNAKKRRFRKKKE 184


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 379  EDSYEDNETIEIEVRPQTEDEDDED 453
            EDS ED+E +    R Q E+ED+ED
Sbjct: 1421 EDSDEDDEPVRRRPRRQVEEEDEED 1445


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 379  EDSYEDNETIEIEVRPQTEDEDDED 453
            EDS ED+E +    R Q E+ED+ED
Sbjct: 1421 EDSDEDDEPVRRRPRRQVEEEDEED 1445


>Z69664-8|CAN86924.1| 1287|Caenorhabditis elegans Hypothetical
           protein K04D7.5b protein.
          Length = 1287

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 301 ENDLYFLLPVLQNSKSRERXMPSGXHEDSYEDNETIEIEVRPQTEDEDDED 453
           E+D Y    + +N  S    + +G  ED   D+E    E+  + EDEDDE+
Sbjct: 137 EDDEYDDDYIEENDTSTRNKLNAGSEEDEENDDEE---EIEDEGEDEDDEE 184


>Z69664-7|CAA93515.2| 1338|Caenorhabditis elegans Hypothetical
           protein K04D7.5a protein.
          Length = 1338

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 301 ENDLYFLLPVLQNSKSRERXMPSGXHEDSYEDNETIEIEVRPQTEDEDDED 453
           E+D Y    + +N  S    + +G  ED   D+E    E+  + EDEDDE+
Sbjct: 137 EDDEYDDDYIEENDTSTRNKLNAGSEEDEENDDEE---EIEDEGEDEDDEE 184


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 7/19 (36%), Positives = 17/19 (89%)
 Frame = +2

Query: 194 QIREYKKKQWNNVRDGYRK 250
           ++R+Y +K WN+++DG+++
Sbjct: 342 EVRKYCQKDWNDIQDGFKR 360


>Z81554-3|CAB04505.1|  255|Caenorhabditis elegans Hypothetical
           protein F57G4.6 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 23  LKMTEIEDLISEVEKNPCLWNVGCSNYQNKTQRD 124
           LK  EI   + EVE+ PCL+++   +Y+++ + D
Sbjct: 32  LKNAEILLFLQEVEQYPCLYDLTDKHYKDREKHD 65


>AF036701-6|AAK68607.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC416.1 protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 23/84 (27%), Positives = 41/84 (48%)
 Frame = +2

Query: 47  LISEVEKNPCLWNVGCSNYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQIREYKKKQWN 226
           LI+EV+  P L++     Y   + R+ A           WN++  E+ +   E+ K +W 
Sbjct: 53  LIAEVKARPFLYDQSDEGYNLLSWRNSA-----------WNEI-AENLETTSEHVKTRWK 100

Query: 227 NVRDGYRKY*TETKIRPCQRRNSF 298
            +RD Y+K   E K R  ++ +S+
Sbjct: 101 TLRDRYKK--EEKKERVSKKASSW 122


>Z49967-7|CAA90257.1|  740|Caenorhabditis elegans Hypothetical
           protein F54C9.9 protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/57 (22%), Positives = 31/57 (54%)
 Frame = +1

Query: 283 KKKFIYENDLYFLLPVLQNSKSRERXMPSGXHEDSYEDNETIEIEVRPQTEDEDDED 453
           K + I+ ++ Y +   +Q ++  E+ + S   +  YED + ++++   + E E D+D
Sbjct: 381 KMQSIFNDEYYGVEENIQENED-EKPIFSDMEDSDYEDYDNLDVDELKREEQEADDD 436


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 204 NIKRNNGITSETVTENIEQKQKYARAKEEIHLR 302
           N  + NGI+ ET+++N E++++  R +    LR
Sbjct: 3   NETKTNGISEETISDNEEEEEEEERHRTSSFLR 35


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 258 VQYFR*PSLTLFHCFFLYSLICF--LSSMFKSFQCGMILLHISSRAKSLC 115
           V+Y +  SL++F   FL   +CF  + S    ++  ++   I S  KSLC
Sbjct: 182 VKYVQWASLSMFQSIFLLIALCFTIICSSVSLYKLIILPDRIKSAEKSLC 231


>U41109-1|ABC48251.1|  248|Caenorhabditis elegans Hypothetical
           protein F52E1.5 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 310 LYFLLPVLQNSKSRERXMPSGXHEDSYEDNETIEIEVRPQTEDEDDED 453
           L  L PVL  +KS E+    G  ED++     +EI    ++E   D+D
Sbjct: 4   LLLLFPVLLLAKSPEKRSKVGIDEDNFLQLLEVEIARTLRSELSSDDD 51


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 379 EDSYEDNETIEIEVRPQTEDEDDED 453
           E+  ED E IE++   + E+ED+E+
Sbjct: 291 EEDEEDEEEIEMDEEDEEEEEDEEE 315


>Z81586-1|CAB04690.1|  579|Caenorhabditis elegans Hypothetical
           protein T05F1.2 protein.
          Length = 579

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 135 KRYAKESSHIGMI*TWKIKSKLGNIKR 215
           K Y K ++ IG + TW +K K G  K+
Sbjct: 128 KTYVKYNAEIGRVKTWDMKGKEGEHKQ 154


>Z70684-2|CAA94596.1|  268|Caenorhabditis elegans Hypothetical
           protein F28D1.2 protein.
          Length = 268

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 343 KSRERXMPSGXHEDSYEDNETIEIEVRPQTEDEDDED 453
           K  +  M     E+ YE+ E  E+E   + E+E DE+
Sbjct: 225 KKNDDLMKEEEGEEDYEEEENYEVEEDFEDEEEYDEE 261


>Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical
           protein E02H4.5 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +3

Query: 132 GKRYAKESSHIGMI*TWKIKSKLGNIKRNNGITSETVTENIEQKQKYAR 278
           GK++ ++ +       W  KSK  ++K    +  ++ ++ + + Q Y R
Sbjct: 53  GKKHGRQRNIPNRASNWSSKSKCASLKEQTDLNVQSHSQKLPRNQGYTR 101


>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
           protein T21C12.1a protein.
          Length = 1106

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 231 TLFHCFFLYSLICFLSSMF--KSFQCGMILL 145
           T+ HC  L S++C L  +F    F C  +L+
Sbjct: 726 TVSHCLSLSSIVCLLFGLFPLTKFNCSSLLV 756


>AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical
           protein F56E10.1 protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 244 PKILNRNKNTPVPKKKFIYENDLYFLLPVLQNSKSRERXMPSGXHEDSYEDNETIEIEVR 423
           P  L  +K  P+   +    +D    + +L +    E        ED+ ED+E  + E  
Sbjct: 4   PSELGASKEKPIELNEDDESSDGENSVIILDSDTEPEDGAGGEEDEDNGEDSEEEDEEDS 63

Query: 424 PQTEDEDDED 453
            + E EDD D
Sbjct: 64  DEEESEDDSD 73


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 83  NVGCSNYQNKTQRDLAREEICKRIIPHWNDLNMEDKKQIREYKKKQWNNVRDGYRK 250
           + GC++ ++   R    + +    + +  +L M+DKK+++EY K + +NV   Y K
Sbjct: 28  DAGCTDEESLRTRSC--DLVLADFLENSGNLYMKDKKRLKEY-KDECHNVLSCYNK 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,992
Number of Sequences: 27780
Number of extensions: 209679
Number of successful extensions: 928
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)