Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0968
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    29   0.44 
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    28   0.76 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   4.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.4  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.4  

>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 96  QTLGVSSVSELRHALGSALDVPVKKQAVSGSGGEGDKPTSKDQPDELVYTDSSHF*RARS 275
           +T GVS +S  +H L     VP +K + S +    DK    + PD   Y  S H   A  
Sbjct: 27  ETAGVSQLS--KHLLPQWSGVPHRKISASATNFN-DKVKESNTPDANAYIRSGHIKAAEH 83

Query: 276 HQILTMTIVST 308
            ++  + +V +
Sbjct: 84  EKVKKVVVVGS 94


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 495 LLAMSFRSKVLRSHFKYIGGVA-VSAIKSSF--SLMSSRNFGYSSNLSASPTSLI 340
           LL  +F S   RSHF YI G+A + ++   F   LMS++N  ++  +S    SL+
Sbjct: 103 LLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLL 157


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 353 GLADRFEEYPKLRELIKLKDDLIAETATPPMY 448
           G+ D F E+P L E   +  DLIA +   P+Y
Sbjct: 333 GVKD-FTEFPDLEETQIIYSDLIASSEVSPIY 363


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 507 NTSNLLAMSFRSKVLRSHF-KYIGGVAVSAIKSSFSLMSSRNFGYSSNLSASPTS 346
           ++S L + SF S    S     +   +  +  SS SL SS +   +S+ SASPTS
Sbjct: 62  SSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTS 116


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 169 NKLCLEAEVKEINPPVRTNRMNLYTPTPLI 258
           N     A+  + N PV+++  N YTP P I
Sbjct: 267 NSFPASADRLQKNHPVQSSNFNPYTPAPSI 296


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 DTGQRPQNYIRDVGL 358
           D  Q+PQNY+++V L
Sbjct: 845 DFSQKPQNYVKEVNL 859


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,205
Number of Sequences: 5004
Number of extensions: 40142
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)